RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 MRGBPQ9NV56 204 aa16.12■□□□□ 0.17
CCDC88B-206ENST00000473405 FAM220BPB1ANY3 271 aa16.11■□□□□ 0.17
CCDC88B-206ENST00000473405 CENPBD1B2RD01 187 aa16.11■□□□□ 0.17
CCDC88B-206ENST00000473405 MCIDASD6RGH6 385 aa16.11■□□□□ 0.17
CCDC88B-206ENST00000473405 PIP5K1CO60331 668 aa16.11■□□□□ 0.17
CCDC88B-206ENST00000473405 TRMUO75648 421 aaKnown RBP16.11■□□□□ 0.17
CCDC88B-206ENST00000473405 FARS2O95363 451 aaKnown RBP16.11■□□□□ 0.17
CCDC88B-206ENST00000473405 MMP7P09237 267 aaPredicted RBP16.11■□□□□ 0.17
CCDC88B-206ENST00000473405 FAM157BP0CG42 384 aa16.11■□□□□ 0.17
CCDC88B-206ENST00000473405 HNF1AP20823 631 aa16.11■□□□□ 0.17
CCDC88B-206ENST00000473405 LSP1P33241 339 aa16.11■□□□□ 0.17
CCDC88B-206ENST00000473405 ARFIP2P53365 341 aa16.11■□□□□ 0.17
CCDC88B-206ENST00000473405 CR1LQ2VPA4 569 aa16.11■□□□□ 0.17
CCDC88B-206ENST00000473405 LRRC23Q53EV4 343 aaPredicted RBP16.11■□□□□ 0.17
CCDC88B-206ENST00000473405 CYBRD1Q53TN4 286 aa16.11■□□□□ 0.17
CCDC88B-206ENST00000473405 C10orf128Q5T292 105 aa16.11■□□□□ 0.17
CCDC88B-206ENST00000473405 ARMC4Q5T2S8 1044 aa16.11■□□□□ 0.17
CCDC88B-206ENST00000473405 NMD3Q96D46 503 aaKnown RBP16.11■□□□□ 0.17
CCDC88B-206ENST00000473405 INIPQ9NRY2 104 aa16.11■□□□□ 0.17
CCDC88B-206ENST00000473405 NPIPB13A6NJU9 1138 aa16.1■□□□□ 0.17
CCDC88B-206ENST00000473405 NPIPB4C9JG80 1138 aa16.1■□□□□ 0.17
CCDC88B-206ENST00000473405 SNAP29O95721 258 aa16.1■□□□□ 0.17
CCDC88B-206ENST00000473405 VIMP08670 466 aaKnown RBP16.1■□□□□ 0.17
CCDC88B-206ENST00000473405 THRBP10828 461 aa16.1■□□□□ 0.17
CCDC88B-206ENST00000473405 NAT2P11245 290 aa16.1■□□□□ 0.17
CCDC88B-206ENST00000473405 ACADSP16219 412 aa16.1■□□□□ 0.17
CCDC88B-206ENST00000473405 FUT4P22083 530 aa16.1■□□□□ 0.17
CCDC88B-206ENST00000473405 DAP3P51398 398 aaKnown RBP16.1■□□□□ 0.17
CCDC88B-206ENST00000473405 CDH15P55291 814 aa16.1■□□□□ 0.17
CCDC88B-206ENST00000473405 ERVS71-1P61550 626 aa16.1■□□□□ 0.17
CCDC88B-206ENST00000473405 SRSF2Q01130 221 aaKnown RBP16.1■□□□□ 0.17
CCDC88B-206ENST00000473405 CCNIQ14094 377 aa16.1■□□□□ 0.17
CCDC88B-206ENST00000473405 MAPRE2Q15555 327 aa16.1■□□□□ 0.17
CCDC88B-206ENST00000473405 SLC36A2Q495M3 483 aa16.1■□□□□ 0.17
CCDC88B-206ENST00000473405 TMEM53Q6P2H8 277 aa16.1■□□□□ 0.17
CCDC88B-206ENST00000473405 SLC16A14Q7RTX9 510 aa16.1■□□□□ 0.17
CCDC88B-206ENST00000473405 HDDC2Q7Z4H3 204 aa16.1■□□□□ 0.17
CCDC88B-206ENST00000473405 DPPA2Q7Z7J5 298 aa16.1■□□□□ 0.17
CCDC88B-206ENST00000473405 LINC01356Q8N9X3 169 aa16.1■□□□□ 0.17
CCDC88B-206ENST00000473405 DUSP13Q9UII6 198 aa16.1■□□□□ 0.17
CCDC88B-206ENST00000473405 UGT2A1Q9Y4X1 527 aa16.1■□□□□ 0.17
CCDC88B-206ENST00000473405 IGLV3-9A0A075B6K5 115 aa16.09■□□□□ 0.17
CCDC88B-206ENST00000473405 IGKV1D-43A0A0B4J1Z2 117 aa16.09■□□□□ 0.17
CCDC88B-206ENST00000473405 LOC100653049A0A140TA62 436 aa16.09■□□□□ 0.17
CCDC88B-206ENST00000473405 A0A1W2PPW3 197 aa16.09■□□□□ 0.17
CCDC88B-206ENST00000473405 KRT34O76011 436 aa16.09■□□□□ 0.17
CCDC88B-206ENST00000473405 SLC2A10O95528 541 aa16.09■□□□□ 0.17
CCDC88B-206ENST00000473405 CLPTM1O96005 669 aa16.09■□□□□ 0.17
CCDC88B-206ENST00000473405 ZNF250P15622 560 aa16.09■□□□□ 0.17
CCDC88B-206ENST00000473405 COL8A2P25067 703 aa16.09■□□□□ 0.17
CCDC88B-206ENST00000473405 KDELR2P33947 212 aa16.09■□□□□ 0.17
CCDC88B-206ENST00000473405 ZNF84P51523 738 aa16.09■□□□□ 0.17
CCDC88B-206ENST00000473405 FMODQ06828 376 aa16.09■□□□□ 0.17
CCDC88B-206ENST00000473405 RGS7BPQ6MZT1 257 aaPredicted RBP16.09■□□□□ 0.17
CCDC88B-206ENST00000473405 RBM15BQ8NDT2 890 aaKnown RBP16.09■□□□□ 0.17
CCDC88B-206ENST00000473405 OR2T12Q8NG77 320 aa16.09■□□□□ 0.17
CCDC88B-206ENST00000473405 YIPF5Q969M3 257 aa16.09■□□□□ 0.17
CCDC88B-206ENST00000473405 NABP1Q96AH0 204 aa16.09■□□□□ 0.17
CCDC88B-206ENST00000473405 TSPAN32Q96QS1 320 aa16.09■□□□□ 0.17
CCDC88B-206ENST00000473405 RACGAP1Q9H0H5 632 aa16.09■□□□□ 0.17
CCDC88B-206ENST00000473405 OR51B6Q9H340 312 aa16.09■□□□□ 0.17
CCDC88B-206ENST00000473405 C1orf198Q9H425 327 aa16.09■□□□□ 0.17
CCDC88B-206ENST00000473405 RNF121Q9H920 327 aa16.09■□□□□ 0.17
CCDC88B-206ENST00000473405 A4GNTQ9UNA3 340 aa16.09■□□□□ 0.17
CCDC88B-206ENST00000473405 MED31Q9Y3C7 131 aa16.09■□□□□ 0.17
CCDC88B-206ENST00000473405 RP2O75695 350 aa16.08■□□□□ 0.16
CCDC88B-206ENST00000473405 IFNA14P01570 189 aa16.08■□□□□ 0.16
CCDC88B-206ENST00000473405 ACHEP22303 614 aa16.08■□□□□ 0.16
CCDC88B-206ENST00000473405 CDAP32320 146 aa16.08■□□□□ 0.16
CCDC88B-206ENST00000473405 MRPS11P82912 194 aaKnown RBP16.08■□□□□ 0.16
CCDC88B-206ENST00000473405 MRPS34P82930 218 aaKnown RBP16.08■□□□□ 0.16
CCDC88B-206ENST00000473405 TBC1D28Q2M2D7 210 aa16.08■□□□□ 0.16
CCDC88B-206ENST00000473405 ALKBH6Q3KRA9 238 aa16.08■□□□□ 0.16
CCDC88B-206ENST00000473405 MICU2Q8IYU8 434 aa16.08■□□□□ 0.16
CCDC88B-206ENST00000473405 LRRC18Q8N456 261 aa16.08■□□□□ 0.16
CCDC88B-206ENST00000473405 HDAC2Q92769 488 aaKnown RBP16.08■□□□□ 0.16
CCDC88B-206ENST00000473405 RDH5Q92781 318 aa16.08■□□□□ 0.16
CCDC88B-206ENST00000473405 SMURF2Q9HAU4 748 aa16.08■□□□□ 0.16
CCDC88B-206ENST00000473405 CDH20Q9HBT6 801 aa16.08■□□□□ 0.16
CCDC88B-206ENST00000473405 ZNF275Q9NSD4 429 aaPredicted RBP16.08■□□□□ 0.16
CCDC88B-206ENST00000473405 ZNF446Q9NWS9 450 aa16.08■□□□□ 0.16
CCDC88B-206ENST00000473405 GID8Q9NWU2 228 aa16.08■□□□□ 0.16
CCDC88B-206ENST00000473405 GMPR2Q9P2T1 348 aaKnown RBP16.08■□□□□ 0.16
CCDC88B-206ENST00000473405 ZNF346Q9UL40 294 aaKnown RBP16.08■□□□□ 0.16
CCDC88B-206ENST00000473405 HIF3AQ9Y2N7 669 aa16.08■□□□□ 0.16
CCDC88B-206ENST00000473405 CAPN7Q9Y6W3 813 aa16.08■□□□□ 0.16
CCDC88B-206ENST00000473405 SLC22A23A1A5C7 686 aa16.07■□□□□ 0.16
CCDC88B-206ENST00000473405 WNT9BO14905 357 aa16.07■□□□□ 0.16
CCDC88B-206ENST00000473405 MAGEB1P43366 347 aa16.07■□□□□ 0.16
CCDC88B-206ENST00000473405 KLF3P57682 345 aaPredicted RBP16.07■□□□□ 0.16
CCDC88B-206ENST00000473405 LAPTM4AQ15012 233 aa16.07■□□□□ 0.16
CCDC88B-206ENST00000473405 NKPD1Q17RQ9 610 aa16.07■□□□□ 0.16
CCDC88B-206ENST00000473405 PCYOX1LQ8NBM8 494 aa16.07■□□□□ 0.16
CCDC88B-206ENST00000473405 CPEB3Q8NE35 698 aaKnown RBP16.07■□□□□ 0.16
CCDC88B-206ENST00000473405 CLDND2Q8NHS1 167 aa16.07■□□□□ 0.16
CCDC88B-206ENST00000473405 RCN3Q96D15 328 aa16.07■□□□□ 0.16
CCDC88B-206ENST00000473405 BPIFA2Q96DR5 249 aa16.07■□□□□ 0.16
CCDC88B-206ENST00000473405 TPD52L3Q96J77 140 aa16.07■□□□□ 0.16
CCDC88B-206ENST00000473405 PRRC1Q96M27 445 aa16.07■□□□□ 0.16
CCDC88B-206ENST00000473405 TXNIPQ9H3M7 391 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms