RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 RNF115Q9Y4L5 304 aa10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 MAGED1Q9Y5V3 778 aaPredicted RBP10.4□□□□□ -0.74
SQSTM1-206ENST00000466342 A0A0G2JK05 382 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 UNC119BA6NIH7 251 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 OR5H1A6NKK0 313 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 ZNF587BE7ETH6 402 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 GNGT2O14610 69 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 SSX4O60224 188 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 UPK3AO75631 287 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 TIPRLO75663 272 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 KRT33AO76009 404 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 BCL10O95999 233 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 IGHMP01871 453 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 CD3EP07766 207 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 ITGA5P08648 1049 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 MPGP29372 298 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 GSSP48637 474 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 DAP3P51398 398 aaKnown RBP10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 FOXG1P55316 489 aaPredicted RBP10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 CTXN1P60606 82 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 ACTR3P61158 418 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 LGALS3BPQ08380 585 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 CAMK2DQ13557 499 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 MELKQ14680 651 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 PPA1Q15181 289 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 TAF11Q15544 211 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 ZSCAN26Q16670 478 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 MICAQ29983 383 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 CARD17Q5XLA6 110 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 ZNF770Q6IQ21 691 aaPredicted RBP10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 LINGO2Q7L985 606 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 HDDC2Q7Z4H3 204 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 IGFN1Q86VF2 1251 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 WDFY1Q8IWB7 410 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 C20orf196Q8IYI0 205 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 GPR137CQ8N3F9 429 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 ZNF433Q8N7K0 673 aaPredicted RBP10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 ASB10Q8WXI3 467 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 LRR1Q96L50 414 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 GPA33Q99795 319 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 TXNIPQ9H3M7 391 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 DNAJB9Q9UBS3 223 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 AP4S1Q9Y587 144 aa10.39□□□□□ -0.75
SQSTM1-206ENST00000466342 ARRDC5A6NEK1 342 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 DPRXA6NFQ7 191 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 MCIDASD6RGH6 385 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 RPL36A-HNRNPH2H7BZ11 118 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 PTP4A3O75365 173 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 DEAF1O75398 565 aaPredicted RBP10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 E2F6O75461 281 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 RAD51DO75771 328 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 NDUFB2O95178 105 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 PGA4P0DJD7 388 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 PGA3P0DJD8 388 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 ZNF26P17031 533 aaPredicted RBP10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 IGFBP5P24593 272 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 CSNK1A1P48729 337 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 FXYD6P3P58550 94 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 RPL27P61353 136 aaKnown RBP10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 ROR2Q01974 943 aaKnown RBP10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 TGFBR3Q03167 851 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 TSPAN31Q12999 210 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 KPNB1Q14974 876 aaKnown RBP10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 STK11Q15831 433 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 PHYHD1Q5SRE7 291 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 FAM120AOSQ5T036 256 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 ARMC4Q5T2S8 1044 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 C1QTNF12Q5T7M4 302 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 OR7E24Q6IFN5 339 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 SEZ6L2Q6UXD5 910 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 IL17RELQ6ZVW7 336 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 TMEM179BQ7Z7N9 219 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 RFLNBQ8N5W9 214 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 AQP11Q8NBQ7 271 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 C1orf162Q8NEQ5 155 aaPredicted RBP10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 OR10G2Q8NGC3 310 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 OR6N1Q8NGY5 312 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 ZNF566Q969W8 418 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 SLC25A44Q96H78 314 aaPredicted RBP10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 MUS81Q96NY9 551 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 GPX7Q96SL4 187 aaPredicted RBP10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 KATNB1Q9BVA0 655 aa10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 STX18Q9P2W9 335 aaKnown RBP10.38□□□□□ -0.75
SQSTM1-206ENST00000466342 CIB4A0PJX0 185 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 CENPBD1B2RD01 187 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 M0R3G1 203 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 TCF21O43680 179 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 TRMUO75648 421 aaKnown RBP10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 GASTP01350 101 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 IGHG1P01857 330 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 CD14P08571 375 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 IGHV4-31P0DP07 118 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 FCGR1AP12314 374 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 ACADSP16219 412 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 ZNF16P17020 682 aaPredicted RBP10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 FASP25445 335 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 RPL4P36578 427 aaKnown RBP10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 SH3BGRP55822 239 aaPredicted RBP10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 DSCR9P59020 149 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 BSPH1Q075Z2 132 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms