RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 FAM227AF5H4B4 570 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 M0R1X1 148 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 EMC8O43402 210 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 ZNF354AO60765 605 aaPredicted RBP12.28□□□□□ -0.44
USP40-208ENST00000450966 MPIG6BO95866 241 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 FBXO45P0C2W1 286 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 NAGAP17050 411 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 HBA1P69905 142 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 FOXK1P85037 733 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 DMWDQ09019 674 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 PIN1Q13526 163 aaPredicted RBP12.28□□□□□ -0.44
USP40-208ENST00000450966 HAGHQ16775 308 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 ATP6V1FQ16864 119 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 TMEM35AQ53FP2 167 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 SUSD1Q6UWL2 747 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 UBALD2Q8IYN6 164 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 OR13C8Q8NGS7 320 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 FUBP1Q96AE4 644 aaKnown RBP12.28□□□□□ -0.44
USP40-208ENST00000450966 ZC3HAV1LQ96H79 300 aaKnown RBP12.28□□□□□ -0.44
USP40-208ENST00000450966 RNF150Q9ULK6 438 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 ZNF90Q03938 601 aa12.27□□□□□ -0.44
USP40-208ENST00000450966 ZNF534Q76KX8 674 aa12.27□□□□□ -0.44
USP40-208ENST00000450966 ZNF429Q86V71 674 aa12.27□□□□□ -0.44
USP40-208ENST00000450966 NLGN4XQ8N0W4 816 aa12.27□□□□□ -0.44
USP40-208ENST00000450966 NLGN4YQ8NFZ3 816 aaPredicted RBP12.27□□□□□ -0.44
USP40-208ENST00000450966 OR5AP2Q8NGF4 316 aa12.27□□□□□ -0.44
USP40-208ENST00000450966 BCAS3Q9H6U6 928 aa12.27□□□□□ -0.44
USP40-208ENST00000450966 SRA1Q9HD15 236 aaKnown RBP12.27□□□□□ -0.44
USP40-208ENST00000450966 EHFQ9NZC4 300 aa12.27□□□□□ -0.44
USP40-208ENST00000450966 SRPK3Q9UPE1 567 aa12.27□□□□□ -0.44
USP40-208ENST00000450966 MCRIP1C9JLW8 97 aa12.27□□□□□ -0.44
USP40-208ENST00000450966 PTGESO14684 152 aa12.27□□□□□ -0.44
USP40-208ENST00000450966 NDUFB2O95178 105 aa12.27□□□□□ -0.44
USP40-208ENST00000450966 SDHBP21912 280 aa12.27□□□□□ -0.44
USP40-208ENST00000450966 GSK3AP49840 483 aa12.27□□□□□ -0.44
USP40-208ENST00000450966 SOX4Q06945 474 aaPredicted RBP12.27□□□□□ -0.44
USP40-208ENST00000450966 ZNF528Q3MIS6 628 aa12.27□□□□□ -0.44
USP40-208ENST00000450966 ZNF836Q6ZNA1 936 aa12.27□□□□□ -0.44
USP40-208ENST00000450966 TAS1R3Q7RTX0 852 aa12.27□□□□□ -0.44
USP40-208ENST00000450966 EDAQ92838 391 aa12.27□□□□□ -0.44
USP40-208ENST00000450966 SORCS2Q96PQ0 1159 aa12.27□□□□□ -0.44
USP40-208ENST00000450966 SLC35B3Q9H1N7 401 aa12.27□□□□□ -0.44
USP40-208ENST00000450966 FKBP11Q9NYL4 201 aa12.27□□□□□ -0.44
USP40-208ENST00000450966 CNIH4Q9P003 139 aa12.27□□□□□ -0.44
USP40-208ENST00000450966 CLEC2DQ9UHP7 191 aa12.27□□□□□ -0.44
USP40-208ENST00000450966 KIR2DS5A0A0G2JLQ3 304 aa12.27□□□□□ -0.45
USP40-208ENST00000450966 A0A0G2JNG1 304 aa12.27□□□□□ -0.45
USP40-208ENST00000450966 HIDE1A8MVS5 230 aa12.27□□□□□ -0.45
USP40-208ENST00000450966 KIR2DS3K7RE56 304 aa12.27□□□□□ -0.45
USP40-208ENST00000450966 RAB27BO00194 218 aa12.27□□□□□ -0.45
USP40-208ENST00000450966 GASTP01350 101 aa12.27□□□□□ -0.45
USP40-208ENST00000450966 ITGB7P26010 798 aa12.27□□□□□ -0.45
USP40-208ENST00000450966 RPL13AP40429 203 aaKnown RBP12.27□□□□□ -0.45
USP40-208ENST00000450966 FHITP49789 147 aa12.27□□□□□ -0.45
USP40-208ENST00000450966 GAB1Q13480 694 aa12.27□□□□□ -0.45
USP40-208ENST00000450966 KIR2DS5Q14953 304 aa12.27□□□□□ -0.45
USP40-208ENST00000450966 CYB5R2Q6BCY4 276 aa12.27□□□□□ -0.45
USP40-208ENST00000450966 TMPPEQ6ZT21 453 aa12.27□□□□□ -0.45
USP40-208ENST00000450966 PRRX2Q99811 253 aa12.27□□□□□ -0.45
USP40-208ENST00000450966 NCOR1P1Q9H4R4 102 aa12.27□□□□□ -0.45
USP40-208ENST00000450966 MPTX1A8MV57 137 aa12.27□□□□□ -0.45
USP40-208ENST00000450966 KIAA1324LA8MWY0 1029 aaPredicted RBP12.27□□□□□ -0.45
USP40-208ENST00000450966 LINC00587B1AMM8 73 aa12.27□□□□□ -0.45
USP40-208ENST00000450966 RPA2P15927 270 aa12.27□□□□□ -0.45
USP40-208ENST00000450966 SFTPDP35247 375 aa12.27□□□□□ -0.45
USP40-208ENST00000450966 MMP15P51511 669 aa12.27□□□□□ -0.45
USP40-208ENST00000450966 SLC43A2Q8N370 569 aa12.27□□□□□ -0.45
USP40-208ENST00000450966 GHSRQ92847 366 aa12.27□□□□□ -0.45
USP40-208ENST00000450966 ZMYND19Q96E35 227 aaPredicted RBP12.27□□□□□ -0.45
USP40-208ENST00000450966 DAZAP1Q96EP5 407 aaKnown RBP12.27□□□□□ -0.45
USP40-208ENST00000450966 SAT2Q96F10 170 aaPredicted RBP12.27□□□□□ -0.45
USP40-208ENST00000450966 hCG_1809904A0A1W2PP81 198 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 A0A1W2PR64 198 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 A0A1W2PRV1 198 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 F6UZH7 168 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 NSA2O95478 260 aaKnown RBP12.26□□□□□ -0.45
USP40-208ENST00000450966 RNF224P0DH78 156 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 RNH1P13489 461 aaKnown RBP12.26□□□□□ -0.45
USP40-208ENST00000450966 GABRA1P14867 456 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 DLK1P80370 383 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 DEFB103AP81534 67 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 MEF2AQ02078 507 aaPredicted RBP12.26□□□□□ -0.45
USP40-208ENST00000450966 ZNF385CQ66K41 422 aaPredicted RBP12.26□□□□□ -0.45
USP40-208ENST00000450966 PRSS45Q7RTY3 260 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 OR1S2Q8NGQ3 325 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 MACROD1Q9BQ69 325 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 ZNF442Q9H7R0 627 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 BRF2Q9HAW0 419 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 SLC22A7Q9Y694 548 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 GBAP04062 536 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 EDN1P05305 212 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 ASGR2P07307 311 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 EPHA1P21709 976 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 IRS1P35568 1242 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 CSNK1DP48730 415 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 CLEC14AQ86T13 490 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 NECAP1Q8NC96 275 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 ZNF275Q9NSD4 429 aaPredicted RBP12.26□□□□□ -0.45
USP40-208ENST00000450966 SIT1Q9Y3P8 196 aa12.26□□□□□ -0.45
USP40-208ENST00000450966 CROCCQ5TZA2 2017 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms