RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 NDUFS7O75251 213 aa13.17□□□□□ -0.3
LIMS3-201ENST00000437679 PDE5AO76074 875 aa13.17□□□□□ -0.3
LIMS3-201ENST00000437679 SEMG1P04279 462 aa13.17□□□□□ -0.3
LIMS3-201ENST00000437679 OR4A8P0C604 315 aa13.17□□□□□ -0.3
LIMS3-201ENST00000437679 ZNF14P17017 642 aaPredicted RBP13.17□□□□□ -0.3
LIMS3-201ENST00000437679 ZNF133P52736 654 aaPredicted RBP13.17□□□□□ -0.3
LIMS3-201ENST00000437679 SNRPD2P62316 118 aaKnown RBP13.17□□□□□ -0.3
LIMS3-201ENST00000437679 SPIBQ01892 262 aa13.17□□□□□ -0.3
LIMS3-201ENST00000437679 HGFACQ04756 655 aa13.17□□□□□ -0.3
LIMS3-201ENST00000437679 SLC36A2Q495M3 483 aa13.17□□□□□ -0.3
LIMS3-201ENST00000437679 C10orf128Q5T292 105 aa13.17□□□□□ -0.3
LIMS3-201ENST00000437679 TMEM53Q6P2H8 277 aa13.17□□□□□ -0.3
LIMS3-201ENST00000437679 SLC16A14Q7RTX9 510 aa13.17□□□□□ -0.3
LIMS3-201ENST00000437679 CIARTQ8N365 385 aaPredicted RBP13.17□□□□□ -0.3
LIMS3-201ENST00000437679 OR52J3Q8NH60 311 aa13.17□□□□□ -0.3
LIMS3-201ENST00000437679 MS4A3Q96HJ5 214 aa13.17□□□□□ -0.3
LIMS3-201ENST00000437679 DHRS1Q96LJ7 313 aa13.17□□□□□ -0.3
LIMS3-201ENST00000437679 RBP7Q96R05 134 aa13.17□□□□□ -0.3
LIMS3-201ENST00000437679 KCNK17Q96T54 332 aa13.17□□□□□ -0.3
LIMS3-201ENST00000437679 SH3GL3Q99963 347 aa13.17□□□□□ -0.3
LIMS3-201ENST00000437679 KCNN2Q9H2S1 579 aa13.17□□□□□ -0.3
LIMS3-201ENST00000437679 GSX1Q9H4S2 264 aaPredicted RBP13.17□□□□□ -0.3
LIMS3-201ENST00000437679 RNF121Q9H920 327 aa13.17□□□□□ -0.3
LIMS3-201ENST00000437679 SMURF2Q9HAU4 748 aa13.17□□□□□ -0.3
LIMS3-201ENST00000437679 AURKCQ9UQB9 309 aa13.17□□□□□ -0.3
LIMS3-201ENST00000437679 SPEF1Q9Y4P9 236 aa13.17□□□□□ -0.3
LIMS3-201ENST00000437679 TRBV4-1A0A0J9YWV2 114 aa13.16□□□□□ -0.3
LIMS3-201ENST00000437679 B9A039 149 aa13.16□□□□□ -0.3
LIMS3-201ENST00000437679 CDC42EP2O14613 210 aa13.16□□□□□ -0.3
LIMS3-201ENST00000437679 SMAD7O15105 426 aaKnown RBP13.16□□□□□ -0.3
LIMS3-201ENST00000437679 GADD45GO95257 159 aa13.16□□□□□ -0.3
LIMS3-201ENST00000437679 SLC2A10O95528 541 aa13.16□□□□□ -0.3
LIMS3-201ENST00000437679 FABP3P05413 133 aa13.16□□□□□ -0.3
LIMS3-201ENST00000437679 PATE4P0C8F1 98 aa13.16□□□□□ -0.3
LIMS3-201ENST00000437679 NUDT6P53370 316 aa13.16□□□□□ -0.3
LIMS3-201ENST00000437679 ERVK-25P63136 954 aa13.16□□□□□ -0.3
LIMS3-201ENST00000437679 SNTB2Q13425 540 aaKnown RBP13.16□□□□□ -0.3
LIMS3-201ENST00000437679 TNK1Q13470 666 aa13.16□□□□□ -0.3
LIMS3-201ENST00000437679 FHL1Q13642 323 aa13.16□□□□□ -0.3
LIMS3-201ENST00000437679 DAG1Q14118 895 aa13.16□□□□□ -0.3
LIMS3-201ENST00000437679 RAB39AQ14964 217 aa13.16□□□□□ -0.3
LIMS3-201ENST00000437679 ADIPOQQ15848 244 aa13.16□□□□□ -0.3
LIMS3-201ENST00000437679 SWI5Q1ZZU3 235 aa13.16□□□□□ -0.3
LIMS3-201ENST00000437679 IQCCQ4KMZ1 466 aa13.16□□□□□ -0.3
LIMS3-201ENST00000437679 THEM4Q5T1C6 240 aa13.16□□□□□ -0.3
LIMS3-201ENST00000437679 ARIH2OSQ8N7S6 290 aa13.16□□□□□ -0.3
LIMS3-201ENST00000437679 NSMAFQ92636 917 aa13.16□□□□□ -0.3
LIMS3-201ENST00000437679 ZNF75AQ96N20 296 aa13.16□□□□□ -0.3
LIMS3-201ENST00000437679 TSPAN32Q96QS1 320 aa13.16□□□□□ -0.3
LIMS3-201ENST00000437679 MUC13Q9H3R2 512 aa13.16□□□□□ -0.3
LIMS3-201ENST00000437679 ZNF442Q9H7R0 627 aa13.16□□□□□ -0.3
LIMS3-201ENST00000437679 IL1RAPQ9NPH3 570 aa13.16□□□□□ -0.3
LIMS3-201ENST00000437679 ACTR3BQ9P1U1 418 aa13.16□□□□□ -0.3
LIMS3-201ENST00000437679 GRHPRQ9UBQ7 328 aa13.16□□□□□ -0.3
LIMS3-201ENST00000437679 CSPG4Q6UVK1 2322 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 SH3PXD2BA1X283 911 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 SSX4O60224 188 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 NDUFB2O95178 105 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 SERPINA5P05154 406 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 CD14P08571 375 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 NPR2P20594 1047 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 NR4A1P22736 598 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 THBS4P35443 961 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 GUCA1AP43080 201 aaPredicted RBP13.15□□□□□ -0.3
LIMS3-201ENST00000437679 OMPP47874 163 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 LIMS1P48059 325 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 RIPPLY3P57055 190 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 GALK2Q01415 458 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 FMODQ06828 376 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 SEC23BQ15437 767 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 EFNB3Q15768 340 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 MST1LQ2TV78 715 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 MTX3Q5HYI7 312 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 KRT80Q6KB66 452 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 SLC25A47Q6Q0C1 308 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 CLEC9AQ6UXN8 241 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 CYP2R1Q6VVX0 501 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 RINLQ6ZS11 566 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 ZDHHC21Q8IVQ6 265 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 LRRC18Q8N456 261 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 FGFBP3Q8TAT2 258 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 ZNF519Q8TB69 540 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 BCAS4Q8TDM0 211 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 HTRA1Q92743 480 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 NMD3Q96D46 503 aaKnown RBP13.15□□□□□ -0.3
LIMS3-201ENST00000437679 RSRC1Q96IZ7 334 aaKnown RBP13.15□□□□□ -0.3
LIMS3-201ENST00000437679 SMR3AQ99954 134 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 SIAEQ9HAT2 523 aa13.15□□□□□ -0.3
LIMS3-201ENST00000437679 FBXO9Q9UK97 447 aaPredicted RBP13.15□□□□□ -0.3
LIMS3-201ENST00000437679 PRPF19Q9UMS4 504 aaKnown RBP13.15□□□□□ -0.3
LIMS3-201ENST00000437679 TLN2Q9Y4G6 2542 aa13.14□□□□□ -0.31
LIMS3-201ENST00000437679 UNC119BA6NIH7 251 aa13.14□□□□□ -0.31
LIMS3-201ENST00000437679 XKRYO14609 159 aa13.14□□□□□ -0.31
LIMS3-201ENST00000437679 PTP4A3O75365 173 aa13.14□□□□□ -0.31
LIMS3-201ENST00000437679 PTHP01270 115 aa13.14□□□□□ -0.31
LIMS3-201ENST00000437679 T-ENOLP0DO92 83 aa13.14□□□□□ -0.31
LIMS3-201ENST00000437679 ZNF35P13682 527 aa13.14□□□□□ -0.31
LIMS3-201ENST00000437679 ATP6V1B2P21281 511 aa13.14□□□□□ -0.31
LIMS3-201ENST00000437679 RRM2P31350 389 aa13.14□□□□□ -0.31
LIMS3-201ENST00000437679 CDAP32320 146 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 111.6 ms