RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 SETD7Q8WTS6 366 aaKnown RBP4.02□□□□□ -1.77
CCDC88A-206ENST00000430086 ISOC2Q96AB3 205 aa4.02□□□□□ -1.77
CCDC88A-206ENST00000430086 APH1AQ96BI3 265 aa4.02□□□□□ -1.77
CCDC88A-206ENST00000430086 VSIG2Q96IQ7 327 aa4.02□□□□□ -1.77
CCDC88A-206ENST00000430086 CYYR1Q96J86 154 aa4.02□□□□□ -1.77
CCDC88A-206ENST00000430086 HSFY1Q96LI6 401 aa4.02□□□□□ -1.77
CCDC88A-206ENST00000430086 KCNA7Q96RP8 456 aa4.02□□□□□ -1.77
CCDC88A-206ENST00000430086 ECSITQ9BQ95 431 aa4.02□□□□□ -1.77
CCDC88A-206ENST00000430086 CCDC94Q9BW85 323 aaPredicted RBP4.02□□□□□ -1.77
CCDC88A-206ENST00000430086 HCAR1Q9BXC0 346 aa4.02□□□□□ -1.77
CCDC88A-206ENST00000430086 OPN3Q9H1Y3 402 aaPredicted RBP4.02□□□□□ -1.77
CCDC88A-206ENST00000430086 EXOSC3Q9NQT5 275 aaKnown RBP4.02□□□□□ -1.77
CCDC88A-206ENST00000430086 THUMPD1Q9NXG2 353 aaKnown RBP4.02□□□□□ -1.77
CCDC88A-206ENST00000430086 RBAKQ9NYW8 714 aaPredicted RBP4.02□□□□□ -1.77
CCDC88A-206ENST00000430086 DPM3Q9P2X0 92 aa4.02□□□□□ -1.77
CCDC88A-206ENST00000430086 MOKQ9UQ07 419 aa4.02□□□□□ -1.77
CCDC88A-206ENST00000430086 SLC17A4Q9Y2C5 497 aa4.02□□□□□ -1.77
CCDC88A-206ENST00000430086 USP6P35125 1406 aa4.02□□□□□ -1.77
CCDC88A-206ENST00000430086 METP08581 1390 aa4.02□□□□□ -1.77
CCDC88A-206ENST00000430086 A0A1B0GUS0 222 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 B4DXG7 233 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 TNFSF11O14788 317 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 XRCC2O43543 280 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 EIF4E2O60573 245 aaKnown RBP4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 VAPBO95292 243 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 C1orf105O95561 183 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 TSPAN13O95857 204 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 FADS2O95864 444 aaKnown RBP4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 OCMP0CE72 109 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 ZNF19P17023 458 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 BGNP21810 368 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 IDSP22304 550 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 IL32P24001 234 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 S100A5P33763 92 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 LEPP41159 167 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 POU3F4P49335 361 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 EFNA3P52797 238 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 FBXW4P57775 412 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 KRTAP12-2P59991 146 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 VLDLRP98155 873 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 ZNF154Q13106 437 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 ART3Q13508 389 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 TMEM52BQ4KMG9 183 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 PAGE2BQ5JRK9 111 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 SOHLH1Q5JUK2 328 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 OR52E8Q6IFG1 317 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 ZNF836Q6ZNA1 936 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 FAM122BQ7Z309 247 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 CMC1Q7Z7K0 106 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 PLA2G4DQ86XP0 818 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 C12orf56Q8IXR9 622 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 PRR22Q8IZ63 422 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 SELENOHQ8IZQ5 122 aaKnown RBP4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 KRT222Q8N1A0 295 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 MS4A15Q8N5U1 240 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 TRAM1L1Q8N609 369 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 ZNF565Q8N9K5 539 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 PYROXD1Q8WU10 500 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 TMEM239Q8WW34 195 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 CAPSLQ8WWF8 208 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 GTF2H4Q92759 462 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 TMEM80Q96HE8 168 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 TSSK3Q96PN8 268 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 DRC3Q9H069 523 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 SAV1Q9H4B6 383 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 KIR3DX1Q9H7L2 352 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 PSTPIP2Q9H939 334 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 NTN4Q9HB63 628 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 ANKHQ9HCJ1 492 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 SDHAF3Q9NRP4 125 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 HRASLS2Q9NWW9 162 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 CCDC59Q9P031 241 aaKnown RBP4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 ZNF282Q9UDV7 671 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 WARS2Q9UGM6 360 aaKnown RBP4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 ERVW-1Q9UQF0 538 aa4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 CFAP65Q6ZU64 1925 aaKnown RBP4.01□□□□□ -1.77
CCDC88A-206ENST00000430086 ATRXP46100 2492 aa4□□□□□ -1.77
CCDC88A-206ENST00000430086 A0A1B0GW15 77 aa4□□□□□ -1.77
CCDC88A-206ENST00000430086 SAGE2PA6NJ88 616 aa4□□□□□ -1.77
CCDC88A-206ENST00000430086 GOLGA8RI6L899 631 aa4□□□□□ -1.77
CCDC88A-206ENST00000430086 TOR1AO14656 332 aa4□□□□□ -1.77
CCDC88A-206ENST00000430086 ZBTB5O15062 677 aa4□□□□□ -1.77
CCDC88A-206ENST00000430086 SCAMP2O15127 329 aaKnown RBP4□□□□□ -1.77
CCDC88A-206ENST00000430086 MYO1DO94832 1006 aa4□□□□□ -1.77
CCDC88A-206ENST00000430086 LYPD3O95274 346 aa4□□□□□ -1.77
CCDC88A-206ENST00000430086 CST4P01036 141 aa4□□□□□ -1.77
CCDC88A-206ENST00000430086 ZNF853P0CG23 659 aa4□□□□□ -1.77
CCDC88A-206ENST00000430086 SLC2A5P22732 501 aa4□□□□□ -1.77
CCDC88A-206ENST00000430086 CALCRP30988 508 aa4□□□□□ -1.77
CCDC88A-206ENST00000430086 ADARB1P78563 741 aaKnown RBP4□□□□□ -1.77
CCDC88A-206ENST00000430086 PMS2P3Q13401 168 aa4□□□□□ -1.77
CCDC88A-206ENST00000430086 ZNF79Q15937 498 aa4□□□□□ -1.77
CCDC88A-206ENST00000430086 PGGHGQ32M88 737 aa4□□□□□ -1.77
CCDC88A-206ENST00000430086 C9orf129Q5T035 196 aaKnown RBP4□□□□□ -1.77
CCDC88A-206ENST00000430086 TPRG1LQ5T0D9 272 aa4□□□□□ -1.77
CCDC88A-206ENST00000430086 FAM199XQ6PEV8 388 aaPredicted RBP4□□□□□ -1.77
CCDC88A-206ENST00000430086 ASCL4Q6XD76 172 aa4□□□□□ -1.77
CCDC88A-206ENST00000430086 ZNF547Q8IVP9 402 aa4□□□□□ -1.77
CCDC88A-206ENST00000430086 SYS1Q8N2H4 156 aa4□□□□□ -1.77
CCDC88A-206ENST00000430086 EID2Q8N6I1 236 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms