RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 CYB561A3Q8NBI2 242 aa19.43■□□□□ 0.7
SHMT1-203ENST00000354098 BCL2L2Q92843 193 aaPredicted RBP19.43■□□□□ 0.7
SHMT1-203ENST00000354098 FOXB1Q99853 325 aa19.43■□□□□ 0.7
SHMT1-203ENST00000354098 MED18Q9BUE0 208 aa19.43■□□□□ 0.7
SHMT1-203ENST00000354098 NUAK2Q9H093 628 aa19.43■□□□□ 0.7
SHMT1-203ENST00000354098 FN3KQ9H479 309 aa19.43■□□□□ 0.7
SHMT1-203ENST00000354098 CRIM1Q9NZV1 1036 aa19.43■□□□□ 0.7
SHMT1-203ENST00000354098 NDRG3Q9UGV2 375 aa19.43■□□□□ 0.7
SHMT1-203ENST00000354098 SH3D21A4FU49 640 aa19.42■□□□□ 0.7
SHMT1-203ENST00000354098 OR5H1A6NKK0 313 aa19.42■□□□□ 0.7
SHMT1-203ENST00000354098 DCTN6O00399 190 aa19.42■□□□□ 0.7
SHMT1-203ENST00000354098 AHCYL1O43865 530 aa19.42■□□□□ 0.7
SHMT1-203ENST00000354098 THBDP07204 575 aa19.42■□□□□ 0.7
SHMT1-203ENST00000354098 B4GALT1P15291 398 aa19.42■□□□□ 0.7
SHMT1-203ENST00000354098 PEX2P28328 305 aa19.42■□□□□ 0.7
SHMT1-203ENST00000354098 CDAP32320 146 aa19.42■□□□□ 0.7
SHMT1-203ENST00000354098 GRK5P34947 590 aa19.42■□□□□ 0.7
SHMT1-203ENST00000354098 SH3BGRP55822 239 aaPredicted RBP19.42■□□□□ 0.7
SHMT1-203ENST00000354098 TAB1Q15750 504 aa19.42■□□□□ 0.7
SHMT1-203ENST00000354098 ALKBH2Q6NS38 261 aa19.42■□□□□ 0.7
SHMT1-203ENST00000354098 ANKRD16Q6P6B7 361 aa19.42■□□□□ 0.7
SHMT1-203ENST00000354098 C1orf162Q8NEQ5 155 aaPredicted RBP19.42■□□□□ 0.7
SHMT1-203ENST00000354098 FNDC8Q8TC99 324 aa19.42■□□□□ 0.7
SHMT1-203ENST00000354098 DDOQ99489 341 aa19.42■□□□□ 0.7
SHMT1-203ENST00000354098 SPOCK3Q9BQ16 436 aa19.42■□□□□ 0.7
SHMT1-203ENST00000354098 OR10A4Q9H209 315 aa19.42■□□□□ 0.7
SHMT1-203ENST00000354098 RIBC2Q9H4K1 309 aa19.42■□□□□ 0.7
SHMT1-203ENST00000354098 RERGLQ9H628 205 aa19.42■□□□□ 0.7
SHMT1-203ENST00000354098 SLC25A19Q9HC21 320 aa19.42■□□□□ 0.7
SHMT1-203ENST00000354098 UGT2A1Q9Y4X1 527 aa19.42■□□□□ 0.7
SHMT1-203ENST00000354098 SLC16A7O60669 478 aa19.41■□□□□ 0.7
SHMT1-203ENST00000354098 NPRL3Q12980 569 aa19.41■□□□□ 0.7
SHMT1-203ENST00000354098 ZIK1Q3SY52 487 aaPredicted RBP19.41■□□□□ 0.7
SHMT1-203ENST00000354098 TBRG1Q3YBR2 411 aa19.41■□□□□ 0.7
SHMT1-203ENST00000354098 KLHL24Q6TFL4 600 aa19.41■□□□□ 0.7
SHMT1-203ENST00000354098 ZNF813Q6ZN06 617 aa19.41■□□□□ 0.7
SHMT1-203ENST00000354098 WDR31Q8NA23 367 aa19.41■□□□□ 0.7
SHMT1-203ENST00000354098 SLC37A3Q8NCC5 494 aa19.41■□□□□ 0.7
SHMT1-203ENST00000354098 OR52N5Q8NH56 324 aa19.41■□□□□ 0.7
SHMT1-203ENST00000354098 FOXN4Q96NZ1 517 aa19.41■□□□□ 0.7
SHMT1-203ENST00000354098 SRA1Q9HD15 236 aaKnown RBP19.41■□□□□ 0.7
SHMT1-203ENST00000354098 RPRD1BQ9NQG5 326 aaKnown RBP19.41■□□□□ 0.7
SHMT1-203ENST00000354098 MGRN1O60291 552 aa19.4■□□□□ 0.7
SHMT1-203ENST00000354098 NR2C1P13056 603 aa19.4■□□□□ 0.7
SHMT1-203ENST00000354098 CRMP1Q14194 572 aa19.4■□□□□ 0.7
SHMT1-203ENST00000354098 TIMM23BQ5SRD1 257 aa19.4■□□□□ 0.7
SHMT1-203ENST00000354098 ZNF627Q7L945 461 aa19.4■□□□□ 0.7
SHMT1-203ENST00000354098 OR6V1Q8N148 313 aa19.4■□□□□ 0.7
SHMT1-203ENST00000354098 BOD1Q96IK1 185 aa19.4■□□□□ 0.7
SHMT1-203ENST00000354098 GABARAPL3Q9BY60 117 aa19.4■□□□□ 0.7
SHMT1-203ENST00000354098 RNPEPL1Q9HAU8 725 aa19.4■□□□□ 0.7
SHMT1-203ENST00000354098 SLC17A5Q9NRA2 495 aa19.4■□□□□ 0.7
SHMT1-203ENST00000354098 CMC2Q9NRP2 79 aa19.4■□□□□ 0.7
SHMT1-203ENST00000354098 TMEM38BQ9NVV0 291 aa19.4■□□□□ 0.7
SHMT1-203ENST00000354098 RRP15Q9Y3B9 282 aaKnown RBP19.4■□□□□ 0.7
SHMT1-203ENST00000354098 ZAR1LA6NP61 321 aa19.4■□□□□ 0.7
SHMT1-203ENST00000354098 RENP00797 406 aa19.4■□□□□ 0.7
SHMT1-203ENST00000354098 PPP3CBP16298 524 aa19.4■□□□□ 0.7
SHMT1-203ENST00000354098 PEX19P40855 299 aa19.4■□□□□ 0.7
SHMT1-203ENST00000354098 ZNF84P51523 738 aa19.4■□□□□ 0.7
SHMT1-203ENST00000354098 TUBA1BP68363 451 aa19.4■□□□□ 0.7
SHMT1-203ENST00000354098 TUBA4AP68366 448 aa19.4■□□□□ 0.7
SHMT1-203ENST00000354098 SLC34A1Q06495 639 aa19.4■□□□□ 0.7
SHMT1-203ENST00000354098 TUBA1AQ71U36 451 aa19.4■□□□□ 0.7
SHMT1-203ENST00000354098 GALNT4Q8N4A0 578 aa19.4■□□□□ 0.7
SHMT1-203ENST00000354098 HSD17B8Q92506 261 aa19.4■□□□□ 0.7
SHMT1-203ENST00000354098 DACH2Q96NX9 599 aa19.4■□□□□ 0.7
SHMT1-203ENST00000354098 SNX18Q96RF0 628 aa19.4■□□□□ 0.7
SHMT1-203ENST00000354098 KLHL21Q9UJP4 597 aa19.4■□□□□ 0.7
SHMT1-203ENST00000354098 ZNF503-AS2A6NEH8 195 aa19.39■□□□□ 0.69
SHMT1-203ENST00000354098 CASQ2O14958 399 aaPredicted RBP19.39■□□□□ 0.69
SHMT1-203ENST00000354098 SURF4O15260 269 aa19.39■□□□□ 0.69
SHMT1-203ENST00000354098 C17orf78Q8N4C9 275 aa19.39■□□□□ 0.69
SHMT1-203ENST00000354098 SEC61A2Q9H9S3 476 aa19.39■□□□□ 0.69
SHMT1-203ENST00000354098 TVP23BQ9NYZ1 205 aa19.39■□□□□ 0.69
SHMT1-203ENST00000354098 ENOPH1Q9UHY7 261 aa19.39■□□□□ 0.69
SHMT1-203ENST00000354098 B9D1Q9UPM9 204 aa19.39■□□□□ 0.69
SHMT1-203ENST00000354098 COA3Q9Y2R0 106 aaPredicted RBP19.39■□□□□ 0.69
SHMT1-203ENST00000354098 ORC6Q9Y5N6 252 aa19.39■□□□□ 0.69
SHMT1-203ENST00000354098 SLC25A15Q9Y619 301 aa19.39■□□□□ 0.69
SHMT1-203ENST00000354098 A0A1W2PPL8 197 aa19.38■□□□□ 0.69
SHMT1-203ENST00000354098 FAM183AA6NL82 134 aa19.38■□□□□ 0.69
SHMT1-203ENST00000354098 RIIAD1A6NNX1 92 aa19.38■□□□□ 0.69
SHMT1-203ENST00000354098 FAM171A2A8MVW0 826 aa19.38■□□□□ 0.69
SHMT1-203ENST00000354098 SNAP29O95721 258 aa19.38■□□□□ 0.69
SHMT1-203ENST00000354098 GPANK1O95872 356 aa19.38■□□□□ 0.69
SHMT1-203ENST00000354098 SCG5P05408 212 aa19.38■□□□□ 0.69
SHMT1-203ENST00000354098 EPXP11678 715 aa19.38■□□□□ 0.69
SHMT1-203ENST00000354098 COX6B1P14854 86 aa19.38■□□□□ 0.69
SHMT1-203ENST00000354098 RAD23AP54725 363 aa19.38■□□□□ 0.69
SHMT1-203ENST00000354098 PPA1Q15181 289 aa19.38■□□□□ 0.69
SHMT1-203ENST00000354098 OGFRL1Q5TC84 451 aaPredicted RBP19.38■□□□□ 0.69
SHMT1-203ENST00000354098 P2RY8Q86VZ1 359 aa19.38■□□□□ 0.69
SHMT1-203ENST00000354098 WFDC8Q8IUA0 241 aa19.38■□□□□ 0.69
SHMT1-203ENST00000354098 SKA3Q8IX90 412 aa19.38■□□□□ 0.69
SHMT1-203ENST00000354098 SLC22A24Q8N4F4 322 aa19.38■□□□□ 0.69
SHMT1-203ENST00000354098 OR9Q1Q8NGQ5 310 aa19.38■□□□□ 0.69
SHMT1-203ENST00000354098 ZNRF4Q8WWF5 429 aa19.38■□□□□ 0.69
SHMT1-203ENST00000354098 NABP1Q96AH0 204 aa19.38■□□□□ 0.69
SHMT1-203ENST00000354098 MBOAT4Q96T53 435 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms