RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 SUMO3P55854 103 aaPredicted RBP8.3□□□□□ -1.08
ATG4A-202ENST00000345734 ACTC1P68032 377 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 ACTA1P68133 377 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 GABREP78334 506 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 E2F1Q01094 437 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 RUNX1T1Q06455 604 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 SELENBP1Q13228 472 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 SGCBQ16585 318 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 TP53I3Q53FA7 332 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 SLC35D3Q5M8T2 416 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 ZNF600Q6ZNG1 722 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 NDUFAF7Q7L592 441 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 PPP1R32Q7Z5V6 425 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 MARCH9Q86YJ5 346 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 KDM8Q8N371 416 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 POMGNT2Q8NAT1 580 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 NLGN4YQ8NFZ3 816 aaPredicted RBP8.3□□□□□ -1.08
ATG4A-202ENST00000345734 POC1BQ8TC44 478 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 M1APQ8TC57 530 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 CAPSLQ8WWF8 208 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 KCTD7Q96MP8 289 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 KCNN2Q9H2S1 579 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 CDCP1Q9H5V8 836 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 IFT22Q9H7X7 185 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 TMEM9BQ9NQ34 198 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 TRIM36Q9NQ86 728 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 FOXJ2Q9P0K8 574 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 TCFL5Q9UL49 500 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 GRIP1Q9Y3R0 1128 aa8.3□□□□□ -1.08
ATG4A-202ENST00000345734 CHCHD2Q9Y6H1 151 aaPredicted RBP8.3□□□□□ -1.08
ATG4A-202ENST00000345734 IGLV3-32A0A0A0MS00 114 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 PLPP3O14495 311 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 ARHGEF9O43307 516 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 GPANK1O95872 356 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 OR2T7P0C7T2 308 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 APOBEC1P41238 236 aaKnown RBP8.29□□□□□ -1.08
ATG4A-202ENST00000345734 HAAOP46952 286 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 RORCP51449 518 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 ZNF41P51814 821 aaPredicted RBP8.29□□□□□ -1.08
ATG4A-202ENST00000345734 DLX5P56178 289 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 CAV3P56539 151 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 IFITM3Q01628 133 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 BDH1Q02338 343 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 HNRNPA0Q13151 305 aaKnown RBP8.29□□□□□ -1.08
ATG4A-202ENST00000345734 PLPPR5Q32ZL2 321 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 EMC4Q5J8M3 183 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 SHEQ5VZ18 495 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 CORO6Q6QEF8 472 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 ARL9Q6T311 187 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 DHRS13Q6UX07 377 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 TMEM91Q6ZNR0 172 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 PM20D2Q8IYS1 436 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 OR6V1Q8N148 313 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 WDSUB1Q8N9V3 476 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 OR2M3Q8NG83 312 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 OR2T27Q8NH04 317 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 GON7Q9BXV9 100 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 TP63Q9H3D4 680 aaPredicted RBP8.29□□□□□ -1.08
ATG4A-202ENST00000345734 DAPK2Q9UIK4 370 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 PCDHGB6Q9Y5F9 930 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 TVP23AA6NH52 213 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 PRR32B1ATL7 298 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 H3BML4 177 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 NDUFA2O43678 99 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 MT-CO3P00414 261 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 IL1AP01583 271 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 OPN1LWP04000 364 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 HLA-DPB1P04440 258 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 HLA-DOBP13765 273 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 HOXC12P31275 282 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 FGF9P31371 208 aaPredicted RBP8.29□□□□□ -1.08
ATG4A-202ENST00000345734 ACVR1BP36896 505 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 SLC3A1Q07837 685 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 Q0VFX4 171 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 IL10RAQ13651 578 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 OR7A5Q15622 319 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 ACKR1Q16570 336 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 GPR139Q6DWJ6 353 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 ASCC1Q8N9N2 400 aaKnown RBP8.29□□□□□ -1.08
ATG4A-202ENST00000345734 SUMF1Q8NBK3 374 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 ASB15Q8WXK1 588 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 SLC25A46Q96AG3 418 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 LIN37Q96GY3 246 aaPredicted RBP8.29□□□□□ -1.08
ATG4A-202ENST00000345734 SNX18Q96RF0 628 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 DDA1Q9BW61 102 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 SPRY4Q9C004 299 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 SYT4Q9H2B2 425 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 SMURF1Q9HCE7 757 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 SDHAF3Q9NRP4 125 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 NCDNQ9UBB6 729 aa8.29□□□□□ -1.08
ATG4A-202ENST00000345734 A0A075B6Q4 140 aa8.28□□□□□ -1.08
ATG4A-202ENST00000345734 G3V3Y1 287 aa8.28□□□□□ -1.08
ATG4A-202ENST00000345734 PSMD9O00233 223 aa8.28□□□□□ -1.08
ATG4A-202ENST00000345734 ETV2O00321 342 aaPredicted RBP8.28□□□□□ -1.08
ATG4A-202ENST00000345734 TP53I11O14683 189 aa8.28□□□□□ -1.08
ATG4A-202ENST00000345734 OR2T1O43869 369 aa8.28□□□□□ -1.08
ATG4A-202ENST00000345734 NCR1O76036 304 aa8.28□□□□□ -1.08
ATG4A-202ENST00000345734 OR6A2O95222 327 aa8.28□□□□□ -1.08
ATG4A-202ENST00000345734 CCL3P10147 92 aa8.28□□□□□ -1.08
ATG4A-202ENST00000345734 TFPIP10646 304 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms