RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 CFHP08603 1231 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 RTL8BQ17RB0 113 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 TOR2AQ5JU69 321 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 GLYATL3Q5SZD4 288 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 TMEM217Q8N7C4 229 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 ACACAQ13085 2346 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 ZIC2O95409 532 aaPredicted RBP13.22□□□□□ -0.29
COL7A1-201ENST00000328333 OR2B8PP59922 312 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 IKZF1Q13422 519 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 ZNF836Q6ZNA1 936 aa13.22□□□□□ -0.29
COL7A1-201ENST00000328333 TRAV27A0A087WT01 109 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 BCL2L11O43521 198 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 COX5AP20674 150 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 GABRA4P48169 554 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 NLRC3Q7RTR2 1065 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 H2BFWTQ7Z2G1 175 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 OR13D1Q8NGV5 346 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 ACTL7AQ9Y615 435 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 SLC16A7O60669 478 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 SDHBP21912 280 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 RPUSD3Q6P087 351 aaKnown RBP13.21□□□□□ -0.29
COL7A1-201ENST00000328333 Q8N9G6 341 aaPredicted RBP13.21□□□□□ -0.29
COL7A1-201ENST00000328333 SLC38A5Q8WUX1 472 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 EMG1Q92979 244 aaKnown RBP13.21□□□□□ -0.29
COL7A1-201ENST00000328333 SPHK2Q9NRA0 654 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 MED9Q9NWA0 146 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 ELOA3CA0A087WX78 387 aaPredicted RBP13.21□□□□□ -0.29
COL7A1-201ENST00000328333 F7P08709 466 aaPredicted RBP13.21□□□□□ -0.29
COL7A1-201ENST00000328333 DHPSP49366 369 aaPredicted RBP13.21□□□□□ -0.29
COL7A1-201ENST00000328333 MRPL2Q5T653 305 aaKnown RBP13.21□□□□□ -0.29
COL7A1-201ENST00000328333 EDAQ92838 391 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 RIMS4Q9H426 269 aaPredicted RBP13.21□□□□□ -0.29
COL7A1-201ENST00000328333 KCMF1Q9P0J7 381 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 ADAM11O75078 769 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 CYC1P08574 325 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 DEFA4P12838 97 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 CCR6P51684 374 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 POU3F1Q03052 451 aaPredicted RBP13.21□□□□□ -0.29
COL7A1-201ENST00000328333 TEX261Q6UWH6 196 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 TMEM174Q8WUU8 243 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 DLL4Q9NR61 685 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 MRPS28Q9Y2Q9 187 aaKnown RBP13.21□□□□□ -0.29
COL7A1-201ENST00000328333 U3KQ87 197 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 TNFSF12O43508 249 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 TUSC2O75896 110 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 CBX7O95931 251 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 GPR119Q8TDV5 335 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 APH1AQ96BI3 265 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 SRRQ9GZT4 340 aa13.21□□□□□ -0.29
COL7A1-201ENST00000328333 BOKQ9UMX3 212 aaPredicted RBP13.21□□□□□ -0.29
COL7A1-201ENST00000328333 AQP8O94778 261 aa13.21□□□□□ -0.3
COL7A1-201ENST00000328333 FUCA1P04066 466 aa13.21□□□□□ -0.3
COL7A1-201ENST00000328333 RPL7L1Q6DKI1 246 aaKnown RBP13.21□□□□□ -0.3
COL7A1-201ENST00000328333 NPWQ8N729 165 aa13.21□□□□□ -0.3
COL7A1-201ENST00000328333 NOL4LQ96MY1 436 aaPredicted RBP13.21□□□□□ -0.3
COL7A1-201ENST00000328333 RBBP6Q7Z6E9 1792 aaKnown RBP13.21□□□□□ -0.3
COL7A1-201ENST00000328333 NCBP2LA6PVI3 153 aaKnown RBP13.21□□□□□ -0.3
COL7A1-201ENST00000328333 LMAN2Q12907 356 aa13.21□□□□□ -0.3
COL7A1-201ENST00000328333 NUDT22Q9BRQ3 303 aa13.21□□□□□ -0.3
COL7A1-201ENST00000328333 A8MU76 341 aa13.21□□□□□ -0.3
COL7A1-201ENST00000328333 GABRB1P18505 474 aa13.21□□□□□ -0.3
COL7A1-201ENST00000328333 RAG2P55895 527 aa13.21□□□□□ -0.3
COL7A1-201ENST00000328333 OR7E24Q6IFN5 339 aa13.21□□□□□ -0.3
COL7A1-201ENST00000328333 ZNF852Q6ZMS4 543 aa13.21□□□□□ -0.3
COL7A1-201ENST00000328333 GABARAPL3Q9BY60 117 aa13.21□□□□□ -0.3
COL7A1-201ENST00000328333 GKN1Q9NS71 199 aa13.21□□□□□ -0.3
COL7A1-201ENST00000328333 CD79AP11912 226 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 SNRPBP14678 240 aaKnown RBP13.2□□□□□ -0.3
COL7A1-201ENST00000328333 PSMB10P40306 273 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 NAXDQ8IW45 347 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 DYNC2LI1Q8TCX1 351 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 C2CD4CQ8TF44 421 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 TCTN2Q96GX1 697 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 WNT7BP56706 349 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 OR10A3P58181 314 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 ALKBH1Q13686 389 aaKnown RBP13.2□□□□□ -0.3
COL7A1-201ENST00000328333 PEX11GQ96HA9 241 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 SLC2A8Q9NY64 477 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 RFPL4AA6NLU0 287 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 RFPL4AL1F8VTS6 287 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 H3BML4 177 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 MAN2B1O00754 1011 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 XRCC3O43542 346 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 BLVRBP30043 206 aaPredicted RBP13.2□□□□□ -0.3
COL7A1-201ENST00000328333 NEIL2Q969S2 332 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 PLK3Q9H4B4 646 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 TCTEX1D1Q8N7M0 179 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 ESRP2Q9H6T0 727 aaKnown RBP13.2□□□□□ -0.3
COL7A1-201ENST00000328333 TRAPPC2LQ9UL33 140 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.2□□□□□ -0.31e-6■■■□□ 16.6
COL7A1-201ENST00000328333 GATCO43716 136 aaKnown RBP13.2□□□□□ -0.3
COL7A1-201ENST00000328333 ZNF217O75362 1048 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 CHRM4P08173 479 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 MTHFD2P13995 350 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 NKX2-1P43699 371 aaPredicted RBP13.2□□□□□ -0.3
COL7A1-201ENST00000328333 KCNJ3P48549 501 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 PRLHRP49683 370 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 HHEXQ03014 270 aa13.2□□□□□ -0.3
COL7A1-201ENST00000328333 NKX2-4Q9H2Z4 354 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms