RNA–Protein interactions for RNA: ENST00000295718.6

PTPRN-201, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PTPRN, Length 3,784 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-201ENST00000295718 ETFDHQ16134 617 aa13.19□□□□□ -0.3
PTPRN-201ENST00000295718 ZNF765Q7L2R6 523 aa13.19□□□□□ -0.3
PTPRN-201ENST00000295718 OR1J4Q8NGS1 313 aa13.19□□□□□ -0.3
PTPRN-201ENST00000295718 MIB2Q96AX9 1013 aa13.19□□□□□ -0.3
PTPRN-201ENST00000295718 FAM71F1Q96KD3 344 aaPredicted RBP13.19□□□□□ -0.3
PTPRN-201ENST00000295718 GDF15Q99988 308 aa13.19□□□□□ -0.3
PTPRN-201ENST00000295718 HEXA-AS1Q9H8Q6 139 aa13.19□□□□□ -0.3
PTPRN-201ENST00000295718 C2orf42Q9NWW7 574 aa13.19□□□□□ -0.3
PTPRN-201ENST00000295718 FBXL21Q9UKT6 434 aa13.19□□□□□ -0.3
PTPRN-201ENST00000295718 LSM5Q9Y4Y9 91 aaKnown RBP13.19□□□□□ -0.3
PTPRN-201ENST00000295718 WDR87Q6ZQQ6 2873 aa13.19□□□□□ -0.3
PTPRN-201ENST00000295718 UNC13CQ8NB66 2214 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 TMEM200CA6NKL6 621 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 GLULP15104 373 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 HTR2CP28335 458 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 ZNF626Q68DY1 528 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 ADAMTSL4Q6UY14 1074 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 VN1R4Q7Z5H5 301 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 SPRED2Q7Z698 418 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 RCBTB1Q8NDN9 531 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 OR1E3Q8WZA6 343 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 PRSS27Q9BQR3 290 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 G6PC3Q9BUM1 346 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 C2orf74A8MZ97 194 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 TNFSF12O43508 249 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 FAM157BP0CG42 384 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 CDKN2AP42771 156 aaKnown RBP13.18□□□□□ -0.3
PTPRN-201ENST00000295718 NPY4RP50391 375 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 LIMK1P53667 647 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 ATP1B3P54709 279 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 H2BFSP57053 126 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 RAB5BP61020 215 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 AWAT2Q6E213 333 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 SLC18B1Q6NT16 456 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 AVL9Q8NBF6 648 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 UBL7Q96S82 380 aaPredicted RBP13.18□□□□□ -0.3
PTPRN-201ENST00000295718 CMSS1Q9BQ75 279 aaKnown RBP13.18□□□□□ -0.3
PTPRN-201ENST00000295718 NIT2Q9NQR4 276 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 CPNE7Q9UBL6 633 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 MSRAQ9UJ68 235 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 HRKO00198 91 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 EML2O95834 649 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 CD14P08571 375 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 RNH1P13489 461 aaKnown RBP13.18□□□□□ -0.3
PTPRN-201ENST00000295718 DPTQ07507 201 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 SFTPA2Q8IWL1 248 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 OR2G2Q8NGZ5 317 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 MAFIPQ8WZ33 124 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 HGDQ93099 445 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 LINC00615Q96LM1 132 aaPredicted RBP13.18□□□□□ -0.3
PTPRN-201ENST00000295718 WDR92Q96MX6 357 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 SOSTQ9BQB4 213 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 ZNF700Q9H0M5 742 aa13.18□□□□□ -0.3
PTPRN-201ENST00000295718 CCDC163A0A0D9SF12 145 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 P2RY10O00398 339 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 AHSA1O95433 338 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 AK1P00568 194 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 GP1BBP13224 206 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 HSD11B1P28845 292 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 NR0B1P51843 470 aaKnown RBP13.17□□□□□ -0.3
PTPRN-201ENST00000295718 TANGO2Q6ICL3 276 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 C11orf49Q9H6J7 331 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 BIN3Q9NQY0 253 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 ST6GALNAC2Q9UJ37 374 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 VDAC3Q9Y277 283 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 NPIPA5E9PKD4 350 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 PIN1P1O15428 100 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 MED6O75586 246 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 LDOC1O95751 146 aaPredicted RBP13.17□□□□□ -0.3
PTPRN-201ENST00000295718 THBS1P07996 1170 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 GJA4P35212 333 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 SLC22A6Q4U2R8 563 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 PRAMEF8Q5VWM4 474 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 PRAMEF7Q5VXH5 474 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 DPY19L2P2Q6ZN68 376 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 TMPRSS11FQ6ZWK6 438 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 NUP54Q7Z3B4 507 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 OR2W3Q7Z3T1 314 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 MDGA2Q7Z553 956 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 TMEM200AQ86VY9 491 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 SYS1Q8N2H4 156 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 FAM71CQ8NEG0 241 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 ATOH1Q92858 354 aaPredicted RBP13.17□□□□□ -0.3
PTPRN-201ENST00000295718 HHIPL1Q96JK4 782 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 ZNF285Q96NJ3 590 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 PITHD1Q9GZP4 211 aaPredicted RBP13.17□□□□□ -0.3
PTPRN-201ENST00000295718 NPIPA1Q9UND3 350 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 TNS1Q9HBL0 1735 aaKnown RBP13.17□□□□□ -0.3
PTPRN-201ENST00000295718 A0A0D9SG52 128 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 A0A0G2JK05 382 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 TMEM269A0A1B0GVZ9 245 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 MED19A0JLT2 244 aaPredicted RBP13.17□□□□□ -0.3
PTPRN-201ENST00000295718 SERINC4A6NH21 518 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 SSX5O60225 188 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 ZNF254O75437 659 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 IL9P15248 144 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 HTRA4P83105 476 aaPredicted RBP13.17□□□□□ -0.3
PTPRN-201ENST00000295718 ELP5Q8TE02 316 aa13.17□□□□□ -0.3
PTPRN-201ENST00000295718 SLC25A38Q96DW6 304 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms