RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 SLC16A7O60669 478 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 VSIG10L2P0DP72 767 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 HLA-DQA1Q5Y7H0 255 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 B3GNTL1Q67FW5 361 aaPredicted RBP11.48□□□□□ -0.57
LIG1-201ENST00000263274 TMUB2Q71RG4 321 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 KLHL15Q96M94 604 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 INTS14Q96SY0 518 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 GAS2L1Q99501 681 aaPredicted RBP11.48□□□□□ -0.57
LIG1-201ENST00000263274 PTDSS2Q9BVG9 487 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 ZNF416Q9BWM5 594 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 MFFQ9GZY8 342 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 IFT22Q9H7X7 185 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 MCRIP1C9JLW8 97 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 AMY2AP04746 511 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 THEGLP0DJG4 465 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 SEC61A1P61619 476 aaKnown RBP11.48□□□□□ -0.57
LIG1-201ENST00000263274 DEFA5Q01523 94 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 SPOCK1Q08629 439 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 TAF13Q15543 124 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 LINC01590Q5TEZ4 76 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 SLC6A19Q695T7 634 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 ELP2Q6IA86 826 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 WBP2NLQ6ICG8 309 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 TTLL10Q6ZVT0 673 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 MDGA2Q7Z553 956 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 CD163Q86VB7 1156 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 MUC20Q8N307 709 aaPredicted RBP11.48□□□□□ -0.57
LIG1-201ENST00000263274 POLE3Q9NRF9 147 aa11.48□□□□□ -0.57
LIG1-201ENST00000263274 PRR19A6NJB7 356 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 S1PR1P21453 382 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 STARP49675 285 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 RBMS2Q15434 407 aaKnown RBP11.47□□□□□ -0.57
LIG1-201ENST00000263274 ETFDHQ16134 617 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 SLC35D3Q5M8T2 416 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 FAM74A1Q5RGS3 127 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 PRAMEF17Q5VTA0 474 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 DCAF12L2Q5VW00 463 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 TMEM92Q6UXU6 159 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 CCDC74AQ96AQ1 378 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 ZNF426Q9BUY5 554 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 NXF5Q9H1B4 397 aaKnown RBP11.47□□□□□ -0.57
LIG1-201ENST00000263274 PIPOXQ9P0Z9 390 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 ICAM5Q9UMF0 924 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 PLEKHA6Q9Y2H5 1048 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 ZNF175Q9Y473 711 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 FITM1A5D6W6 292 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 CCSO14618 274 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 ARPC3O15145 178 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 CTDSPLO15194 276 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 NDUFB6O95139 128 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 SEMA4FO95754 770 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 SDHAP31040 664 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 CTHP32929 405 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 HLXQ14774 488 aaPredicted RBP11.47□□□□□ -0.57
LIG1-201ENST00000263274 ZNF74Q16587 644 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 C21orf62-AS1Q17RA5 79 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 C2orf76Q3KRA6 126 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 UNQ9370/PRO34162Q6UXP9 181 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 C19orf47Q8N9M1 422 aaKnown RBP11.47□□□□□ -0.57
LIG1-201ENST00000263274 ZNF417Q8TAU3 575 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 THAP3Q8WTV1 239 aaPredicted RBP11.47□□□□□ -0.57
LIG1-201ENST00000263274 RADILQ96JH8 1075 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 MNTQ99583 582 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 SLC38A3Q99624 504 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 TMEM185BQ9H7F4 350 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 NOP16Q9Y3C1 178 aaKnown RBP11.47□□□□□ -0.57
LIG1-201ENST00000263274 C2orf72A6NCS6 295 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 ZNF264O43296 627 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 SUSD5O60279 629 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 GLSO94925 669 aaPredicted RBP11.47□□□□□ -0.57
LIG1-201ENST00000263274 GIPP09681 153 aaPredicted RBP11.47□□□□□ -0.57
LIG1-201ENST00000263274 ZNF28P17035 718 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 IL12BP29460 328 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 ARL4DP49703 201 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 SKP1P63208 163 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 TOMM34Q15785 309 aaPredicted RBP11.47□□□□□ -0.57
LIG1-201ENST00000263274 TMEM184AQ6ZMB5 413 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 SHISA6Q6ZSJ9 500 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 FAM71CQ8NEG0 241 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 CASTOR1Q8WTX7 329 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 FAM46BQ96A09 425 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 FAM3DQ96BQ1 224 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 C12orf57Q99622 126 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 UBQLN4Q9NRR5 601 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 OBP2AQ9NY56 170 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 PIAS3Q9Y6X2 628 aa11.47□□□□□ -0.57
LIG1-201ENST00000263274 ZNF98A6NK75 572 aa11.46□□□□□ -0.57
LIG1-201ENST00000263274 SOX1O00570 391 aaPredicted RBP11.46□□□□□ -0.57
LIG1-201ENST00000263274 RAB3DO95716 219 aa11.46□□□□□ -0.57
LIG1-201ENST00000263274 LPLP06858 475 aa11.46□□□□□ -0.57
LIG1-201ENST00000263274 GNALP38405 381 aa11.46□□□□□ -0.57
LIG1-201ENST00000263274 DNASE1L1P49184 302 aa11.46□□□□□ -0.57
LIG1-201ENST00000263274 NR0B1P51843 470 aaKnown RBP11.46□□□□□ -0.57
LIG1-201ENST00000263274 ADAM8P78325 824 aa11.46□□□□□ -0.57
LIG1-201ENST00000263274 RAB11BQ15907 218 aa11.46□□□□□ -0.57
LIG1-201ENST00000263274 TSSK4Q6SA08 328 aa11.46□□□□□ -0.57
LIG1-201ENST00000263274 MARCH3Q86UD3 253 aa11.46□□□□□ -0.57
LIG1-201ENST00000263274 TBL1XR1Q9BZK7 514 aa11.46□□□□□ -0.57
LIG1-201ENST00000263274 MMP25Q9NPA2 562 aa11.46□□□□□ -0.57
LIG1-201ENST00000263274 STEAP1Q9UHE8 339 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms