RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 LGALS14Q8TCE9 139 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 LENG9Q96B70 501 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 RCC1LQ96I51 464 aaKnown RBP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 IP6K3Q96PC2 410 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 CST11Q9H112 138 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 ZDHHC6Q9H6R6 413 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 SEMA4GQ9NTN9 838 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 HAO2Q9NYQ3 351 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 SEMA5BQ9P283 1151 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 PCTPQ9UKL6 214 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 C17orf105B2RV13 164 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 TAAR5O14804 337 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 PRR35P0CG20 571 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 CD37P11049 281 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF7P17097 686 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 DGKAP23743 735 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 FGF8P55075 233 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 DUSP8Q13202 625 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 CHIT1Q13231 466 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 EBPQ15125 230 aaKnown RBP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 KCNMB1Q16558 191 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 FAM110CQ1W6H9 321 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 ACSM3Q53FZ2 586 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 LDLRAD2Q5SZI1 272 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 HENMT1Q5T8I9 393 aaKnown RBP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 FBXW9Q5XUX1 488 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 PET117Q6UWS5 81 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 BCDIN3DQ7Z5W3 292 aaKnown RBP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 MYPOPQ86VE0 399 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 CALHM3Q86XJ0 350 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 CILP2Q8IUL8 1156 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 TMEM183AQ8IXX5 376 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 DEFB106AQ8N104 65 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 MTURNQ8N3F0 131 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 OR56A1Q8NGH5 318 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 OR52L1Q8NGH7 329 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 OR51G2Q8NGK0 314 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 OR5W2Q8NH69 310 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 RPUSD4Q96CM3 377 aaKnown RBP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 ZBTB45Q96K62 511 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 FAM71F1Q96KD3 344 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 JSRP1Q96MG2 331 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 CIPCQ9C0C6 399 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 EXOGQ9Y2C4 368 aaKnown RBP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 A0A1W2PPK0 400 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 A0A1W2PS29 197 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF814B7Z6K7 855 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 MAN2B1O00754 1011 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 CNMDO75829 334 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 AMY2AP04746 511 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 SOD3P08294 240 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 PRDX3P30048 256 aaKnown RBP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 APLNRP35414 380 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 CTSOP43234 321 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 LIMS1P48059 325 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 CDKN2DP55273 166 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 OR12D2P58182 307 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 UBE2V1Q13404 147 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 RAB31Q13636 194 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 ABRAXAS2Q15018 415 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 CEBPEQ15744 281 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 RTL6Q6ICC9 239 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 FAAP20Q6NZ36 180 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 PAQR3Q6TCH7 311 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 MTMR14Q8NCE2 650 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 OR9K2Q8NGE7 335 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 OR51A7Q8NH64 312 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 ORAOV1Q8WV07 137 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 PIK3IP1Q96FE7 263 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 HPDLQ96IR7 371 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 MS4A10Q96PG2 267 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 DMRTA2Q96SC8 542 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 HIST1H2BLQ99880 126 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 MFSD1Q9H3U5 465 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 TREX1Q9NSU2 369 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 MRPL22Q9NWU5 206 aaKnown RBP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 NAGKQ9UJ70 344 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 KCNG2Q9UJ96 466 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 AK6Q9Y3D8 172 aaKnown RBP5.28□□□□□ -1.56
SCN1A-216ENST00000637968 CSAG2Q9Y5P2 127 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 FLVCR1Q9Y5Y0 555 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 MTCH2Q9Y6C9 303 aa5.28□□□□□ -1.56
SCN1A-216ENST00000637968 CCDC187A0A096LP49 1063 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 TMEM150BA6NC51 233 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 GAPDHSO14556 408 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-216ENST00000637968 GPR39O43194 453 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 EDIL3O43854 480 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 HIST1H2BKO60814 126 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 LRP3O75074 770 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 PDYNP01213 254 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 PPBPP02775 128 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 HIST1H2BJP06899 126 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 HIST1H2BOP23527 126 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 MPZP25189 248 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 PSMB6P28072 239 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 MC5RP33032 325 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 HIST1H2BBP33778 126 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 ACVR1BP36896 505 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 WNT3AP56704 352 aa5.27□□□□□ -1.57
SCN1A-216ENST00000637968 HIST1H2BDP58876 126 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms