RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 PPT1P50897 306 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 CDH4P55283 916 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 LOXL1Q08397 574 aaPredicted RBP0.96□□□□□ -2.26
SCN1A-208ENST00000625916 ZNF816Q0VGE8 651 aaPredicted RBP0.96□□□□□ -2.26
SCN1A-208ENST00000625916 TCP10Q12799 353 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 KLRB1Q12918 225 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 POU2AF1Q16633 256 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 SLC36A3Q495N2 470 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 NTM-AS1Q6ZSK4 140 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 TMEM179Q6ZVK1 233 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 TICAM2Q86XR7 235 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 PIANPQ8IYJ0 282 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 TMEM123Q8N131 208 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 NECAP1Q8NC96 275 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 OR5D13Q8NGL4 314 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 MED8Q96G25 268 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 TTC25Q96NG3 672 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 RNF5Q99942 180 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 THUMPD2Q9BTF0 503 aaKnown RBP0.96□□□□□ -2.26
SCN1A-208ENST00000625916 COQ10BQ9H8M1 238 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 ADAP2Q9NPF8 381 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 POLE3Q9NRF9 147 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 SAMSN1Q9NSI8 373 aaKnown RBP0.96□□□□□ -2.26
SCN1A-208ENST00000625916 PIPOXQ9P0Z9 390 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 POLDIP2Q9Y2S7 368 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 N6AMT1Q9Y5N5 214 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 S4R3C0 116 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 GPRASP1Q5JY77 1395 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 PNPLA6Q8IY17 1366 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 IGLV3-22A0A075B6J6 115 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 A0A0B4J2A0 478 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 K7EM74 188 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 ZNF207O43670 478 aaKnown RBP0.95□□□□□ -2.26
SCN1A-208ENST00000625916 RAMP3O60896 148 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 IDH1O75874 414 aaKnown RBP0.95□□□□□ -2.26
SCN1A-208ENST00000625916 SCGNO76038 276 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 C1GALT1C1LP0DN25 315 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 DRD5P21918 477 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 MDH1P40925 334 aaKnown RBP0.95□□□□□ -2.26
SCN1A-208ENST00000625916 CDKN2BP42772 138 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 SLC11A1P49279 550 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 UGT2B15P54855 530 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 CBX1P83916 185 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 CDC20Q12834 499 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 PON3Q15166 354 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 KLHL38Q2WGJ6 581 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 FILIP1LQ4L180 1135 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 HSP90AA5PQ58FG0 334 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 TTC23Q5W5X9 447 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 TRIM40Q6P9F5 258 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 Q6ZS52 159 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 PRSS58Q8IYP2 241 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 CEP112Q8N8E3 955 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 ANKFN1Q8N957 763 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 OR4S2Q8NH73 311 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 ABHD3Q8WU67 409 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 RTN4IP1Q8WWV3 396 aaPredicted RBP0.95□□□□□ -2.26
SCN1A-208ENST00000625916 NEURL3Q96EH8 262 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 NARS2Q96I59 477 aaKnown RBP0.95□□□□□ -2.26
SCN1A-208ENST00000625916 SENP8Q96LD8 212 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 CAMK2N2Q96S95 79 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 SORT1Q99523 831 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 SH3GL3Q99963 347 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 TIMM29Q9BSF4 260 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 ZSCAN5AQ9BUG6 496 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 TPPP3Q9BW30 176 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 ZNF717Q9BY31 904 aaPredicted RBP0.95□□□□□ -2.26
SCN1A-208ENST00000625916 MRPL37Q9BZE1 423 aaKnown RBP0.95□□□□□ -2.26
SCN1A-208ENST00000625916 SYNDIG1Q9H7V2 258 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 YY1AP1Q9H869 796 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 RAB18Q9NP72 206 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 UFSP2Q9NUQ7 469 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 SDAD1Q9NVU7 687 aaKnown RBP eCLIP0.95□□□□□ -2.26
SCN1A-208ENST00000625916 TMOD2Q9NZR1 351 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 CTSFQ9UBX1 484 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 CHRNA9Q9UGM1 479 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 SHPKQ9UHJ6 478 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 ZNF391Q9UJN7 358 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 AURKCQ9UQB9 309 aa0.95□□□□□ -2.26
SCN1A-208ENST00000625916 ADGRL1O94910 1474 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 MBLAC1A4D2B0 266 aaPredicted RBP0.94□□□□□ -2.26
SCN1A-208ENST00000625916 METTL21EPA6NDL7 271 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 HIDE1A8MVS5 230 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 J3QKU1 62 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 UBXN8O00124 270 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 PRRG1O14668 218 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 PRKAB2O43741 272 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 CCNE2O96020 404 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 UGT2B4P06133 528 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 GNAO1P09471 354 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 CALM1P0DP23 149 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 CALM2P0DP24 149 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 CALM3P0DP25 149 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 KRT13P13646 458 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 PAX7P23759 505 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 HSD17B2P37059 387 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 CEACAM6P40199 344 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 OPRK1P41145 380 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 PRRX1P54821 245 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 HTD2P86397 168 aa0.94□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms