RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 NPIPA5A0A0B4J1W7 369 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 NPIPA7E9PJI5 369 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 TNFSF12O43508 249 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 NPIPA8P0DM63 369 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 CPMP14384 443 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 BCKDHBP21953 392 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 FASLGP48023 281 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 SCGB2A2Q13296 93 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 GLYATL3Q5SZD4 288 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 GPR137CQ8N3F9 429 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 OR6K3Q8NGY3 331 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 SFT2D1Q8WV19 159 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 WDR89Q96FK6 387 aaPredicted RBP8.22□□□□□ -1.09
VCL-206ENST00000623461 CMC2Q9NRP2 79 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 ATXN7L1Q9ULK2 861 aaPredicted RBP8.22□□□□□ -1.09
VCL-206ENST00000623461 BTBD17A6NE02 478 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 J3QR89 54 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 PHOX2AO14813 284 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 SNAI1O95863 264 aaPredicted RBP8.22□□□□□ -1.09
VCL-206ENST00000623461 CTSLP07711 333 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 FBLP22087 321 aaKnown RBP8.22□□□□□ -1.09
VCL-206ENST00000623461 S100A7P31151 101 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 FCGR2CP31995 323 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 ZNF133P52736 654 aaPredicted RBP8.22□□□□□ -1.09
VCL-206ENST00000623461 FOXK1P85037 733 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 PJVKQ0ZLH3 352 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 ATPAF1Q5TC12 328 aaPredicted RBP8.22□□□□□ -1.09
VCL-206ENST00000623461 LRRTM3Q86VH5 581 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 TSTD1Q8NFU3 115 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 P2RY12Q9H244 342 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 NECAP2Q9NVZ3 263 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 LHX3Q9UBR4 397 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 ENTPD2Q9Y5L3 495 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 POMT1Q9Y6A1 747 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 LRP5LA4QPB2 252 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 E5RGE8 158 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 ADRA2CP18825 462 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 SOX18P35713 384 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 ATP1B3P54709 279 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 HYAL4Q2M3T9 481 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 FAM74A1Q5RGS3 127 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 TMEM130Q8N3G9 435 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 C9orf62Q8N4C0 152 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 LKAAEAR1Q8TD35 194 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 C2orf50Q96LR7 162 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 DEFB118Q96PH6 123 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 SELENOIQ9C0D9 397 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 GCM1Q9NP62 436 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 AK3Q9UIJ7 227 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 NSG2Q9Y328 171 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 AHDC1Q5TGY3 1603 aaPredicted RBP8.22□□□□□ -1.09
VCL-206ENST00000623461 ST8SIA3O43173 380 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 CSF2RAP15509 400 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 PRPH2P23942 346 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 VASPP50552 380 aaPredicted RBP8.22□□□□□ -1.09
VCL-206ENST00000623461 MAP2K6P52564 334 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 HNRNPKP61978 463 aaKnown RBP eCLIP8.22□□□□□ -1.09
VCL-206ENST00000623461 ST3GAL2Q16842 350 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 GSG1Q2KHT4 349 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 OR52R1Q8NGF1 315 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 SLC39A7Q92504 469 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 SPATA6Q9NWH7 488 aaPredicted RBP8.22□□□□□ -1.09
VCL-206ENST00000623461 H3BQ06 376 aaPredicted RBP8.22□□□□□ -1.09
VCL-206ENST00000623461 PRR35P0CG20 571 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 CD70P32970 193 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 PMPCAQ10713 525 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 C12orf73Q69YU5 71 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 TMEM182Q6ZP80 229 aaPredicted RBP8.22□□□□□ -1.09
VCL-206ENST00000623461 RABEPKQ7Z6M1 372 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 TMEM99Q8N816 258 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 TMEM229BQ8NBD8 167 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 SMIM19Q96E16 107 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 SCMH1Q96GD3 660 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 LINC00052Q96N35 136 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 AMDHD1Q96NU7 426 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 SUSD2Q9UGT4 822 aa8.22□□□□□ -1.09
VCL-206ENST00000623461 ZNF638Q14966 1978 aaKnown RBP8.21□□□□□ -1.09
VCL-206ENST00000623461 ZNF98A6NK75 572 aa8.21□□□□□ -1.09
VCL-206ENST00000623461 TOX4O94842 621 aa8.21□□□□□ -1.09
VCL-206ENST00000623461 SYNGR4O95473 234 aa8.21□□□□□ -1.09
VCL-206ENST00000623461 RPL12P30050 165 aaKnown RBP8.21□□□□□ -1.09
VCL-206ENST00000623461 TRHRP34981 398 aaPredicted RBP8.21□□□□□ -1.09
VCL-206ENST00000623461 FABP9Q0Z7S8 132 aa8.21□□□□□ -1.09
VCL-206ENST00000623461 PHYHD1Q5SRE7 291 aa8.21□□□□□ -1.09
VCL-206ENST00000623461 OR51A4Q8NGJ6 313 aa8.21□□□□□ -1.09
VCL-206ENST00000623461 ARGFXA6NJG6 315 aa8.21□□□□□ -1.09
VCL-206ENST00000623461 GJE1A6NN92 205 aa8.21□□□□□ -1.09
VCL-206ENST00000623461 AP4M1O00189 453 aa8.21□□□□□ -1.09
VCL-206ENST00000623461 NDUFB6O95139 128 aa8.21□□□□□ -1.09
VCL-206ENST00000623461 OMGP23515 440 aa8.21□□□□□ -1.09
VCL-206ENST00000623461 KIR2DS3Q14952 304 aa8.21□□□□□ -1.09
VCL-206ENST00000623461 SFRP5Q5T4F7 317 aa8.21□□□□□ -1.09
VCL-206ENST00000623461 SPRYD7Q5W111 196 aa8.21□□□□□ -1.09
VCL-206ENST00000623461 TMEM64Q6YI46 380 aa8.21□□□□□ -1.09
VCL-206ENST00000623461 UBAC2Q8NBM4 344 aa8.21□□□□□ -1.09
VCL-206ENST00000623461 NPRL2Q8WTW4 380 aa8.21□□□□□ -1.09
VCL-206ENST00000623461 C1orf198Q9H425 327 aa8.21□□□□□ -1.09
VCL-206ENST00000623461 UBQLN4Q9NRR5 601 aa8.21□□□□□ -1.09
VCL-206ENST00000623461 ELOA3CA0A087WX78 387 aaPredicted RBP8.21□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms