RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 ZNF286AQ9HBT8 521 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 OBP2AQ9NY56 170 aa12.87□□□□□ -0.35
CPSF1-212ENST00000616140 KRBOX1C9JBD0 128 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 TRAPPC2LH3BP13 241 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 ST6GAL1P15907 406 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 OMGP23515 440 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 RAB4BP61018 213 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 RACK1P63244 317 aaKnown RBP12.86□□□□□ -0.35
CPSF1-212ENST00000616140 DCDP81605 110 aaKnown RBP12.86□□□□□ -0.35
CPSF1-212ENST00000616140 ESCO2Q56NI9 601 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 SLC43A2Q8N370 569 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 SSX3Q99909 188 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 EMC6Q9BV81 110 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 GSX2Q9BZM3 304 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 OR52A1Q9UKL2 312 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 COA3Q9Y2R0 106 aaPredicted RBP12.86□□□□□ -0.35
CPSF1-212ENST00000616140 IGHV3-20A0A0C4DH32 117 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 LOC100289279A0A1B0GTE1 492 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 PRAMEF27A3QJZ7 478 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 SULT1B1O43704 296 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 CTSLP07711 333 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 IRF2P14316 349 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 SOX18P35713 384 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 RPL23AP62750 156 aaKnown RBP12.86□□□□□ -0.35
CPSF1-212ENST00000616140 DUSP8Q13202 625 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 PRAMEF9Q5VWM5 478 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 TCTEX1D2Q8WW35 142 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 TSSK2Q96PF2 358 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 SLCO5A1Q9H2Y9 848 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 COL18A1P39060 1754 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 NRAPQ86VF7 1730 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 GABARAPH6UMI1 98 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 PRKNO60260 465 aaPredicted RBP12.86□□□□□ -0.35
CPSF1-212ENST00000616140 SLC34A2O95436 690 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 IFNA10P01566 189 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 C1QBP02746 253 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 ITGB2P05107 769 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 ANXA7P20073 488 aaKnown RBP12.86□□□□□ -0.35
CPSF1-212ENST00000616140 PTBP1P26599 531 aaKnown RBP eCLIP12.86□□□□□ -0.355e-6■■■□□ 16.4
CPSF1-212ENST00000616140 TPBGQ13641 420 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 PEA15Q15121 130 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 ACTBL2Q562R1 376 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 MSRB3Q8IXL7 192 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 PSMF1Q92530 271 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 ARHGAP9Q9BRR9 750 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 M0R082 166 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 KCNK2O95069 426 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 GCH1P30793 250 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 EVX1P49640 407 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 ZNF674Q2M3X9 581 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 SLC51BQ86UW2 128 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 CALHM3Q86XJ0 350 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 ANGPTL5Q86XS5 388 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 OR13C5Q8NGS8 318 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 TMEM43Q9BTV4 400 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 AKIP1Q9NQ31 210 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 WASH6PQ9NQA3 447 aa12.86□□□□□ -0.35
CPSF1-212ENST00000616140 SULT1C4O75897 302 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 STK17BO94768 372 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 IFNA17P01571 189 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 CPT2P23786 658 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 GABREP78334 506 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 USP51Q70EK9 711 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 CAMKMTQ7Z624 323 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 ADGRE4PQ86SQ3 457 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 SUMF2Q8NBJ7 301 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 CLEC1AQ8NC01 280 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 SDSLQ96GA7 329 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 C6orf106Q9H6K1 298 aaPredicted RBP12.85□□□□□ -0.35
CPSF1-212ENST00000616140 SIRT5Q9NXA8 310 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 SPI1P17947 270 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 M6PRP20645 277 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 ARG2P78540 354 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 TMEM81Q6P7N7 255 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 FRZBQ92765 325 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 C19orf43Q9BQ61 176 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 WIF1Q9Y5W5 379 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 LOXHD1Q8IVV2 1947 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 CD22P20273 847 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 IL2RGP31785 369 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 AFF3P51826 1226 aaKnown RBP12.85□□□□□ -0.35
CPSF1-212ENST00000616140 ERVK-16P61578 105 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 ELAVL1Q15717 326 aaKnown RBP12.85□□□□□ -0.35
CPSF1-212ENST00000616140 NPSR1Q6W5P4 371 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 GRINAQ7Z429 371 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 RDH10Q8IZV5 341 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 PCM1Q15154 2024 aa12.85□□□□□ -0.35
CPSF1-212ENST00000616140 TNRC6CQ9HCJ0 1690 aaKnown RBP12.85□□□□□ -0.35
CPSF1-212ENST00000616140 A0A0U1RQK1 487 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 TTLL8A6PVC2 850 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 PRPH2P23942 346 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 CD79BP40259 229 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 ETV6P41212 452 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 DIO1P49895 249 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 EPHA4P54764 986 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 SLC35A1P78382 337 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 KIAA0040Q15053 153 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 EBPQ15125 230 aaKnown RBP12.84□□□□□ -0.35
CPSF1-212ENST00000616140 PRSS36Q5K4E3 855 aa12.84□□□□□ -0.35
CPSF1-212ENST00000616140 FAM27D1Q5T7N8 215 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms