RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 PHC2Q8IXK0 858 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 TMEM72A0PK05 275 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 RBP2P50120 134 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 TNK1Q13470 666 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 SLC15A4Q8N697 577 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 DTWD2Q8NBA8 298 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 NDFIP1Q9BT67 221 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 ANKRD60Q9BZ19 345 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 SEMA4GQ9NTN9 838 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 GMDSO60547 372 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 TFP02787 698 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 RAP2BP61225 183 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 HSF1Q00613 529 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 SMAD2Q15796 467 aaKnown RBP18.8■□□□□ 0.6
UPF1-207ENST00000599848 CDONQ4KMG0 1287 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 SSX8Q7RTT4 187 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 KANSL1Q7Z3B3 1105 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 FBXL6Q8N531 539 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 ASIC5Q9NY37 505 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 GNG13Q9P2W3 67 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 NLKQ9UBE8 527 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 ADAMTSL3P82987 1691 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 CLDN1O95832 211 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 ABCD3P28288 659 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 DHRS4L2Q6PKH6 230 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 TMEM102Q8N9M5 508 aaPredicted RBP18.8■□□□□ 0.6
UPF1-207ENST00000599848 OR52H1Q8NGJ2 320 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 LRRC15Q8TF66 581 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 FRZBQ92765 325 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 AKR1E2Q96JD6 320 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 TECTBQ96PL2 329 aa18.8■□□□□ 0.6
UPF1-207ENST00000599848 DHRS4L1P0CG22 281 aa18.79■□□□□ 0.6
UPF1-207ENST00000599848 HOXD12P35452 270 aa18.79■□□□□ 0.6
UPF1-207ENST00000599848 TRIP6Q15654 476 aaKnown RBP18.79■□□□□ 0.6
UPF1-207ENST00000599848 LCN10Q6JVE6 187 aa18.79■□□□□ 0.6
UPF1-207ENST00000599848 EGFL6Q8IUX8 553 aa18.79■□□□□ 0.6
UPF1-207ENST00000599848 THAP7Q9BT49 309 aaPredicted RBP18.79■□□□□ 0.6
UPF1-207ENST00000599848 TLE4Q04727 773 aa18.79■□□□□ 0.6
UPF1-207ENST00000599848 TBCEQ15813 527 aaPredicted RBP18.79■□□□□ 0.6
UPF1-207ENST00000599848 BBS1Q8NFJ9 593 aa18.79■□□□□ 0.6
UPF1-207ENST00000599848 TFAP2CQ92754 450 aa18.79■□□□□ 0.6
UPF1-207ENST00000599848 B3GALT5Q9Y2C3 310 aa18.79■□□□□ 0.6
UPF1-207ENST00000599848 A0A0U1RQS6 177 aa18.79■□□□□ 0.6
UPF1-207ENST00000599848 PCBP4P57723 403 aaKnown RBP18.79■□□□□ 0.6
UPF1-207ENST00000599848 PIGFQ07326 219 aa18.79■□□□□ 0.6
UPF1-207ENST00000599848 ACSM1Q08AH1 577 aa18.79■□□□□ 0.6
UPF1-207ENST00000599848 MRPL58Q14197 206 aaKnown RBP18.79■□□□□ 0.6
UPF1-207ENST00000599848 LHFPL2Q6ZUX7 228 aa18.79■□□□□ 0.6
UPF1-207ENST00000599848 ZGLP1P0C6A0 271 aa18.79■□□□□ 0.6
UPF1-207ENST00000599848 PPP1CAP62136 330 aa18.79■□□□□ 0.6
UPF1-207ENST00000599848 ALKBH1Q13686 389 aaKnown RBP18.79■□□□□ 0.6
UPF1-207ENST00000599848 DEFB124Q8NES8 71 aa18.79■□□□□ 0.6
UPF1-207ENST00000599848 OR2V1Q8NHB1 315 aa18.79■□□□□ 0.6
UPF1-207ENST00000599848 SLC5A6Q9Y289 635 aa18.79■□□□□ 0.6
UPF1-207ENST00000599848 TRGV5A0A0B4J1U4 118 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 NPPBP16860 134 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 SLC19A1P41440 591 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 FAM71E1Q6IPT2 247 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 CCBE1Q6UXH8 406 aaPredicted RBP18.78■□□□□ 0.6
UPF1-207ENST00000599848 Q6ZRG5 221 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 DTX3Q8N9I9 347 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 OR11G2Q8NGC1 345 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 OR10J5Q8NHC4 309 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 NKX1-2Q9UD57 310 aaPredicted RBP18.78■□□□□ 0.6
UPF1-207ENST00000599848 SPTY2D1-AS1A0A0U1RR47 76 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 NRG2O14511 850 aaPredicted RBP18.78■□□□□ 0.6
UPF1-207ENST00000599848 UBL3O95164 117 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 SIGLEC14Q08ET2 396 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 WSB2Q9NYS7 404 aaPredicted RBP18.78■□□□□ 0.6
UPF1-207ENST00000599848 C20orf202A1L168 122 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 ACOT8O14734 319 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 DFFBO76075 338 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 GLRA1P23415 457 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 SELPLGQ14242 412 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 LRRC10Q5BKY1 277 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 NHSL2Q5HYW2 709 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 TFAP2EQ6VUC0 442 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 FCRLAQ7L513 359 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 MS4A6EQ96DS6 147 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 ESRP2Q9H6T0 727 aaKnown RBP18.78■□□□□ 0.6
UPF1-207ENST00000599848 A0A087WV62 115 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 CLDN24A6NM45 220 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 EMP3P54852 163 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 SYT9Q86SS6 491 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 RTN4RL1Q86UN2 441 aaPredicted RBP18.78■□□□□ 0.6
UPF1-207ENST00000599848 CLDN22Q8N7P3 220 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 EXO1Q9UQ84 846 aaKnown RBP18.78■□□□□ 0.6
UPF1-207ENST00000599848 KLK4Q9Y5K2 254 aa18.78■□□□□ 0.6
UPF1-207ENST00000599848 TOXO94900 526 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 CLDN15P56746 228 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 ZNF91Q05481 1191 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 BAXQ07812 192 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 RNPS1Q15287 305 aaKnown RBP18.77■□□□□ 0.6
UPF1-207ENST00000599848 ZNF74Q16587 644 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 ENTHD1Q8IYW4 607 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 GABRG1Q8N1C3 465 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 SUMF2Q8NBJ7 301 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 HSD17B8Q92506 261 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 FGGYQ96C11 551 aa18.77■□□□□ 0.6
UPF1-207ENST00000599848 FN3KRPQ9HA64 309 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms