RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 TNFRSF13CQ96RJ3 184 aa13.66□□□□□ -0.22
LIG3-215ENST00000592690 TXNIPQ9H3M7 391 aa13.66□□□□□ -0.22
LIG3-215ENST00000592690 FAIMQ9NVQ4 179 aa13.66□□□□□ -0.22
LIG3-215ENST00000592690 TMEM38BQ9NVV0 291 aa13.66□□□□□ -0.22
LIG3-215ENST00000592690 CHD3Q12873 2000 aaKnown RBP13.65□□□□□ -0.22
LIG3-215ENST00000592690 NPIPB13A6NJU9 1138 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 NPIPB4C9JG80 1138 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 DHHO43323 396 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 PDE5AO76074 875 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 IGHMP01871 453 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 CD79AP11912 226 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 ITGA2P17301 1181 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 PAX7P23759 505 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 CALCRP30988 508 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 SLC9A3P48764 834 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 FABP6P51161 128 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 ATP5J2P56134 94 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 CTXN1P60606 82 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 FMODQ06828 376 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 PIGFQ07326 219 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 RRM2BQ7LG56 351 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 HDDC2Q7Z4H3 204 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 YTHDF3Q7Z739 585 aaKnown RBP13.65□□□□□ -0.22
LIG3-215ENST00000592690 SKA3Q8IX90 412 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 CCDC36Q8IYA8 594 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 CDK20Q8IZL9 346 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 FGFBP3Q8TAT2 258 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 TSPAN32Q96QS1 320 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 KCNS3Q9BQ31 491 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 FUZQ9BT04 418 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 KATNB1Q9BVA0 655 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 DLL4Q9NR61 685 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 ACTR3BQ9P1U1 418 aa13.65□□□□□ -0.22
LIG3-215ENST00000592690 ZNF346Q9UL40 294 aaKnown RBP13.65□□□□□ -0.22
LIG3-215ENST00000592690 CENPBD1B2RD01 187 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 SLC2A10O95528 541 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 CRYAAP02489 173 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 FABP3P05413 133 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 PATE4P0C8F1 98 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 ZNF26P17031 533 aaPredicted RBP13.64□□□□□ -0.23
LIG3-215ENST00000592690 ARR3P36575 388 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 OMPP47874 163 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 LIMS1P48059 325 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 RPL27P61353 136 aaKnown RBP13.64□□□□□ -0.23
LIG3-215ENST00000592690 SPIBQ01892 262 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 GSG1Q2KHT4 349 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 ANKDD1AQ495B1 522 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 AGAP6Q5VW22 663 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 C11orf71Q6IPW1 123 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 ZNF544Q6NX49 715 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 TRPM8Q7Z2W7 1104 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 PIWIL3Q7Z3Z3 882 aaKnown RBP13.64□□□□□ -0.23
LIG3-215ENST00000592690 FBXL14Q8N1E6 418 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 ARHGAP24Q8N264 748 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 MUC15Q8N387 334 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 SLC22A24Q8N4F4 322 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 CLDN22Q8N7P3 220 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 OR4K5Q8NGD3 323 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 MCUR1Q96AQ8 359 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 NMD3Q96D46 503 aaKnown RBP13.64□□□□□ -0.23
LIG3-215ENST00000592690 MS4A3Q96HJ5 214 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 CLPTM1LQ96KA5 538 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 Q96MF0 132 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 ZNF75AQ96N20 296 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 KCNK17Q96T54 332 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 GRIP2Q9C0E4 1043 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 MOV10Q9HCE1 1003 aaKnown RBP13.64□□□□□ -0.23
LIG3-215ENST00000592690 CBLN4Q9NTU7 201 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 TAS2R1Q9NYW7 299 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 STX18Q9P2W9 335 aaKnown RBP13.64□□□□□ -0.23
LIG3-215ENST00000592690 TMEM5Q9Y2B1 443 aa13.64□□□□□ -0.23
LIG3-215ENST00000592690 IGKV1D-43A0A0B4J1Z2 117 aa13.63□□□□□ -0.23
LIG3-215ENST00000592690 IGHV2OR16-5A0A0B4J2B6 119 aa13.63□□□□□ -0.23
LIG3-215ENST00000592690 TCRBV5S2A0A599 114 aa13.63□□□□□ -0.23
LIG3-215ENST00000592690 SH3PXD2BA1X283 911 aa13.63□□□□□ -0.23
LIG3-215ENST00000592690 NDUFS7O75251 213 aa13.63□□□□□ -0.23
LIG3-215ENST00000592690 UBOX5O94941 541 aa13.63□□□□□ -0.23
LIG3-215ENST00000592690 GADD45GO95257 159 aa13.63□□□□□ -0.23
LIG3-215ENST00000592690 ACVR1BP36896 505 aa13.63□□□□□ -0.23
LIG3-215ENST00000592690 GIPRP48546 466 aa13.63□□□□□ -0.23
LIG3-215ENST00000592690 PTDSS1P48651 473 aaKnown RBP13.63□□□□□ -0.23
LIG3-215ENST00000592690 ZNF133P52736 654 aaPredicted RBP13.63□□□□□ -0.23
LIG3-215ENST00000592690 MS4A2Q01362 244 aa13.63□□□□□ -0.23
LIG3-215ENST00000592690 CD47Q08722 323 aa13.63□□□□□ -0.23
LIG3-215ENST00000592690 TAF11Q15544 211 aa13.63□□□□□ -0.23
LIG3-215ENST00000592690 ZBED5Q49AG3 693 aa13.63□□□□□ -0.23
LIG3-215ENST00000592690 C10orf128Q5T292 105 aa13.63□□□□□ -0.23
LIG3-215ENST00000592690 LCN8Q6JVE9 175 aa13.63□□□□□ -0.23
LIG3-215ENST00000592690 PRSS57Q6UWY2 283 aa13.63□□□□□ -0.23
LIG3-215ENST00000592690 ZDHHC21Q8IVQ6 265 aa13.63□□□□□ -0.23
LIG3-215ENST00000592690 ZNF519Q8TB69 540 aa13.63□□□□□ -0.23
LIG3-215ENST00000592690 NANOS1Q8WY41 292 aaKnown RBP13.63□□□□□ -0.23
LIG3-215ENST00000592690 SH3GL3Q99963 347 aa13.63□□□□□ -0.23
LIG3-215ENST00000592690 IL1RAPQ9NPH3 570 aa13.63□□□□□ -0.23
LIG3-215ENST00000592690 GDF2Q9UK05 429 aaPredicted RBP13.63□□□□□ -0.23
LIG3-215ENST00000592690 PRPF19Q9UMS4 504 aaKnown RBP13.63□□□□□ -0.23
LIG3-215ENST00000592690 ADAM18Q9Y3Q7 739 aa13.63□□□□□ -0.23
LIG3-215ENST00000592690 CR1P17927 2039 aa13.63□□□□□ -0.23
LIG3-215ENST00000592690 UBL3O95164 117 aa13.62□□□□□ -0.23
LIG3-215ENST00000592690 IGHV4-39P01824 125 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms