RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 DOC2AQ14183 400 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 GINS1Q14691 196 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 SF1Q15637 639 aaKnown RBP3.76□□□□□ -1.81
LIG3-211ENST00000588713 MPPED2Q15777 294 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 MAPK14Q16539 360 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 SLC5A12Q1EHB4 618 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 HFEQ30201 348 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 PGGHGQ32M88 737 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 SLC36A2Q495M3 483 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 PABPC1L2AQ5JQF8 200 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 UBE2NLQ5JXB2 153 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 IDNKQ5T6J7 187 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 AADACL4Q5VUY2 407 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 PRAMEF8Q5VWM4 474 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 PRAMEF13Q5VWM6 474 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 PRAMEF7Q5VXH5 474 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 RAET1GQ6H3X3 334 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 FAM71E1Q6IPT2 247 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 ALKBH2Q6NS38 261 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 MED27Q6P2C8 311 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 ZNF322Q6U7Q0 402 aaPredicted RBP3.76□□□□□ -1.81
LIG3-211ENST00000588713 UQCC3Q6UW78 93 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 DEF8Q6ZN54 512 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 PGAP1Q75T13 922 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 NLRC3Q7RTR2 1065 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 COMMD6Q7Z4G1 85 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 ADCK2Q7Z695 626 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 TSPAN33Q86UF1 283 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 THOC6Q86W42 341 aaKnown RBP3.76□□□□□ -1.81
LIG3-211ENST00000588713 PAQR7Q86WK9 346 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 TMEM17Q86X19 198 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 SIAH3Q8IW03 269 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 CDH26Q8IXH8 852 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 PDZD9Q8IXQ8 264 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 GPR135Q8IZ08 494 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 OR4N4Q8N0Y3 316 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 OR6V1Q8N148 313 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 CLDN19Q8N6F1 224 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 SAMD12Q8N8I0 201 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 ZNF527Q8NB42 609 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 FBXO15Q8NCQ5 510 aaPredicted RBP3.76□□□□□ -1.81
LIG3-211ENST00000588713 MORN4Q8NDC4 146 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 OR4K5Q8NGD3 323 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 OR56A3Q8NH54 315 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 OR1S1Q8NH92 325 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 SUN3Q8TAQ9 357 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 SLC7A13Q8TCU3 470 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 GNPDA2Q8TDQ7 276 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 SMAP2Q8WU79 429 aaPredicted RBP3.76□□□□□ -1.81
LIG3-211ENST00000588713 SPRYD4Q8WW59 207 aaPredicted RBP3.76□□□□□ -1.81
LIG3-211ENST00000588713 GATAD2BQ8WXI9 593 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 OR5P2Q8WZ92 322 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 RND1Q92730 232 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 UBE2E3Q969T4 207 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 DACT3Q96B18 629 aaPredicted RBP3.76□□□□□ -1.81
LIG3-211ENST00000588713 EID2BQ96D98 161 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 ELP4Q96EB1 424 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 TMEM19Q96HH6 336 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 CXorf58Q96LI9 332 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 SFXN2Q96NB2 322 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 IP6K3Q96PC2 410 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 SMIM14Q96QK8 99 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 PKP4Q99569 1192 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 NPAS1Q99742 590 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 MRI1Q9BV20 369 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 TMED9Q9BVK6 235 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 LGR4Q9BXB1 951 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 CACNG6Q9BXT2 260 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 KRTAP9-9Q9BYP9 154 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 KRTAP9-4Q9BYQ2 154 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 TM6SF2Q9BZW4 377 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 MRPL18Q9H0U6 180 aaKnown RBP3.76□□□□□ -1.81
LIG3-211ENST00000588713 ABCG8Q9H221 673 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 SLC25A32Q9H2D1 315 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 WDR26Q9H7D7 661 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 SLC6A20Q9NP91 592 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 IL26Q9NPH9 171 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 KRCC1Q9NPI7 259 aaPredicted RBP3.76□□□□□ -1.81
LIG3-211ENST00000588713 EQTNQ9NQ60 294 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 NANSQ9NR45 359 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 TVP23BQ9NYZ1 205 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 STOX2Q9P2F5 926 aaPredicted RBP3.76□□□□□ -1.81
LIG3-211ENST00000588713 MGAT4CQ9UBM8 478 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 EPHA6Q9UF33 1036 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 FBXL4Q9UKA2 621 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 A4GNTQ9UNA3 340 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 NPIPA1Q9UND3 350 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 PPIEQ9UNP9 301 aaKnown RBP3.76□□□□□ -1.81
LIG3-211ENST00000588713 CAMK2AQ9UQM7 478 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 SLC22A14Q9Y267 594 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 HS3ST2Q9Y278 367 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 TMEM5Q9Y2B1 443 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 PTRH2Q9Y3E5 179 aaKnown RBP3.76□□□□□ -1.81
LIG3-211ENST00000588713 NPFFR2Q9Y5X5 522 aa3.76□□□□□ -1.81
LIG3-211ENST00000588713 HRNRQ86YZ3 2850 aaPredicted RBP3.76□□□□□ -1.81
LIG3-211ENST00000588713 CCDC88CQ9P219 2028 aa3.75□□□□□ -1.81
LIG3-211ENST00000588713 TRAV1-2A0A0B4J238 106 aa3.75□□□□□ -1.81
LIG3-211ENST00000588713 C17orf113A0A1B0GUU1 675 aa3.75□□□□□ -1.81
LIG3-211ENST00000588713 SLC9B1P1A6NJY1 282 aa3.75□□□□□ -1.81
LIG3-211ENST00000588713 MCRIP1C9JLW8 97 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms