RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 MELKQ14680 651 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 ACER2Q5QJU3 275 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 HBMQ6B0K9 141 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 SLC18B1Q6NT16 456 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 KCTD18Q6PI47 426 aaPredicted RBP12.73□□□□□ -0.37
LIG3-205ENST00000585941 METAP1DQ6UB28 335 aaPredicted RBP12.73□□□□□ -0.37
LIG3-205ENST00000585941 DPY19L4Q7Z388 723 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 LYSMD2Q8IV50 215 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 UEVLDQ8IX04 471 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 MIB2Q96AX9 1013 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 OR5B2Q96R09 309 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 ATF6BQ99941 703 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 TSPAN10Q9H1Z9 355 aaPredicted RBP12.73□□□□□ -0.37
LIG3-205ENST00000585941 PROK2Q9HC23 129 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 ABCB10Q9NRK6 738 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 MRM2Q9UI43 246 aaKnown RBP12.73□□□□□ -0.37
LIG3-205ENST00000585941 TEKT2Q9UIF3 430 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 DKKL1Q9UK85 242 aa12.73□□□□□ -0.37
LIG3-205ENST00000585941 WDFY4Q6ZS81 3184 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 ALPK2Q86TB3 2170 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 SHISA3A0PJX4 238 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 STMND1H3BQB6 276 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 ZNF593O00488 134 aaPredicted RBP12.72□□□□□ -0.37
LIG3-205ENST00000585941 TERTO14746 1132 aaKnown RBP12.72□□□□□ -0.37
LIG3-205ENST00000585941 MAGEB4O15481 346 aaPredicted RBP12.72□□□□□ -0.37
LIG3-205ENST00000585941 TBX1O43435 398 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 RAD1O60671 282 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 SLC19A2O60779 497 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 TMEM127O75204 238 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 KHDRBS3O75525 346 aaKnown RBP12.72□□□□□ -0.37
LIG3-205ENST00000585941 ZNF432O94892 652 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 ABHD16AO95870 558 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 UCHL1P09936 223 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 CTLA4P16410 223 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 SHC1P29353 583 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 CLDN6P56747 220 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 LIPNQ5VXI9 398 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 ZNF544Q6NX49 715 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 XKRXQ6PP77 449 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 UNQ9370/PRO34162Q6UXP9 181 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 THEM6Q8WUY1 208 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 THRSPQ92748 146 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 DIRAS2Q96HU8 199 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 OXGR1Q96P68 337 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 RBP7Q96R05 134 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 RNF32Q9H0A6 362 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 SP140LQ9H930 580 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 IKZF2Q9UKS7 526 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 KLHDC2Q9Y2U9 406 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 V9GYH0 126 aa12.72□□□□□ -0.37
LIG3-205ENST00000585941 GJE1A6NN92 205 aa12.71□□□□□ -0.37
LIG3-205ENST00000585941 PRR33A8MZF0 331 aa12.71□□□□□ -0.37
LIG3-205ENST00000585941 SULT2B1O00204 365 aa12.71□□□□□ -0.37
LIG3-205ENST00000585941 EIF1BO60739 113 aaKnown RBP12.71□□□□□ -0.37
LIG3-205ENST00000585941 UPK3AO75631 287 aa12.71□□□□□ -0.37
LIG3-205ENST00000585941 TNFSF15O95150 251 aa12.71□□□□□ -0.37
LIG3-205ENST00000585941 HRGP04196 525 aa12.71□□□□□ -0.37
LIG3-205ENST00000585941 OR8G3PP0DMU2 310 aa12.71□□□□□ -0.37
LIG3-205ENST00000585941 MAPK3P27361 379 aaPredicted RBP12.71□□□□□ -0.37
LIG3-205ENST00000585941 ROM1Q03395 351 aa12.71□□□□□ -0.37
LIG3-205ENST00000585941 RASGEF1BQ0VAM2 473 aa12.71□□□□□ -0.37
LIG3-205ENST00000585941 ALKBH1Q13686 389 aaKnown RBP12.71□□□□□ -0.37
LIG3-205ENST00000585941 TMEM176BQ3YBM2 270 aaPredicted RBP12.71□□□□□ -0.37
LIG3-205ENST00000585941 TEX30Q5JUR7 227 aa12.71□□□□□ -0.37
LIG3-205ENST00000585941 TMEM225Q6GV28 225 aa12.71□□□□□ -0.37
LIG3-205ENST00000585941 FDX2Q6P4F2 183 aa12.71□□□□□ -0.37
LIG3-205ENST00000585941 TMPPEQ6ZT21 453 aa12.71□□□□□ -0.37
LIG3-205ENST00000585941 KDM8Q8N371 416 aa12.71□□□□□ -0.37
LIG3-205ENST00000585941 GDPD1Q8N9F7 314 aa12.71□□□□□ -0.37
LIG3-205ENST00000585941 PPP1R14BQ96C90 147 aa12.71□□□□□ -0.37
LIG3-205ENST00000585941 OR8B4Q96RC9 309 aa12.71□□□□□ -0.37
LIG3-205ENST00000585941 PIGQQ9BRB3 760 aa12.71□□□□□ -0.37
LIG3-205ENST00000585941 MIXL1Q9H2W2 232 aa12.71□□□□□ -0.37
LIG3-205ENST00000585941 KLHL9Q9P2J3 617 aa12.71□□□□□ -0.37
LIG3-205ENST00000585941 KLHL13Q9P2N7 655 aa12.71□□□□□ -0.37
LIG3-205ENST00000585941 RASD1Q9Y272 281 aa12.71□□□□□ -0.37
LIG3-205ENST00000585941 FABP12A6NFH5 140 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 ANKRD61A6NGH8 418 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 AQP7P3A6NL99 342 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 PFDN1O60925 122 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 NR2C1P13056 603 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 ZNF823P16415 610 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 RAB3BP20337 219 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 TGM1P22735 817 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 CD82P27701 267 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 SRD5A2P31213 254 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 PTGS2P35354 604 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 PSMB10P40306 273 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 CYB561P49447 251 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 RPS11P62280 158 aaKnown RBP eCLIP12.7□□□□□ -0.38
LIG3-205ENST00000585941 ADAM8P78325 824 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 THEM4Q5T1C6 240 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 RAET1LQ5VY80 246 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 STEAP3Q658P3 488 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 FAM131AQ6UXB0 335 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 NHLRC1Q6VVB1 395 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 ZNF679Q8IYX0 411 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 OR5AK2Q8NH90 309 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 NSMAFQ92636 917 aa12.7□□□□□ -0.38
LIG3-205ENST00000585941 GNRHR2Q96P88 292 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms