RNA–Protein interactions for RNA: ENST00000584083.5

SS18-224, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 663 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-224ENST00000584083 NOXO1Q8NFA2 376 aa17.71■□□□□ 0.43
SS18-224ENST00000584083 MCHR2Q969V1 340 aa17.71■□□□□ 0.43
SS18-224ENST00000584083 MS4A3Q96HJ5 214 aa17.71■□□□□ 0.43
SS18-224ENST00000584083 REG4Q9BYZ8 158 aa17.71■□□□□ 0.43
SS18-224ENST00000584083 ARL8BQ9NVJ2 186 aa17.71■□□□□ 0.43
SS18-224ENST00000584083 TMEM38BQ9NVV0 291 aa17.71■□□□□ 0.43
SS18-224ENST00000584083 STX18Q9P2W9 335 aaKnown RBP17.71■□□□□ 0.43
SS18-224ENST00000584083 HIF3AQ9Y2N7 669 aa17.71■□□□□ 0.43
SS18-224ENST00000584083 FAM32AQ9Y421 112 aaKnown RBP17.71■□□□□ 0.43
SS18-224ENST00000584083 NIPBLQ6KC79 2804 aaeCLIP17.71■□□□□ 0.42
SS18-224ENST00000584083 EFCAB9A8MZ26 197 aa17.7■□□□□ 0.42
SS18-224ENST00000584083 FARS2O95363 451 aaKnown RBP17.7■□□□□ 0.42
SS18-224ENST00000584083 TSPAN19P0C672 248 aa17.7■□□□□ 0.42
SS18-224ENST00000584083 PATE4P0C8F1 98 aa17.7■□□□□ 0.42
SS18-224ENST00000584083 THBS4P35443 961 aa17.7■□□□□ 0.42
SS18-224ENST00000584083 GIPRP48546 466 aa17.7■□□□□ 0.42
SS18-224ENST00000584083 MXRA7P84157 204 aa17.7■□□□□ 0.42
SS18-224ENST00000584083 PRKCDQ05655 676 aa17.7■□□□□ 0.42
SS18-224ENST00000584083 TOP3AQ13472 1001 aaPredicted RBP17.7■□□□□ 0.42
SS18-224ENST00000584083 ADIPOQQ15848 244 aa17.7■□□□□ 0.42
SS18-224ENST00000584083 SWI5Q1ZZU3 235 aa17.7■□□□□ 0.42
SS18-224ENST00000584083 MST1LQ2TV78 715 aa17.7■□□□□ 0.42
SS18-224ENST00000584083 OAFQ86UD1 273 aa17.7■□□□□ 0.42
SS18-224ENST00000584083 RNF113BQ8IZP6 322 aaKnown RBP17.7■□□□□ 0.42
SS18-224ENST00000584083 PGAM4Q8N0Y7 254 aa17.7■□□□□ 0.42
SS18-224ENST00000584083 NUP37Q8NFH4 326 aa17.7■□□□□ 0.42
SS18-224ENST00000584083 OR51A7Q8NH64 312 aa17.7■□□□□ 0.42
SS18-224ENST00000584083 SH3GL3Q99963 347 aa17.7■□□□□ 0.42
SS18-224ENST00000584083 RHNO1Q9BSD3 238 aa17.7■□□□□ 0.42
SS18-224ENST00000584083 MRPL13Q9BYD1 178 aaKnown RBP17.7■□□□□ 0.42
SS18-224ENST00000584083 TXNIPQ9H3M7 391 aa17.7■□□□□ 0.42
SS18-224ENST00000584083 DENND2DQ9H6A0 471 aaPredicted RBP17.7■□□□□ 0.42
SS18-224ENST00000584083 NMNAT1Q9HAN9 279 aaPredicted RBP17.7■□□□□ 0.42
SS18-224ENST00000584083 DCAF13Q9NV06 445 aaKnown RBP17.7■□□□□ 0.42
SS18-224ENST00000584083 ZNF224Q9NZL3 707 aa17.7■□□□□ 0.42
SS18-224ENST00000584083 SAMD4AQ9UPU9 718 aaKnown RBP17.7■□□□□ 0.42
SS18-224ENST00000584083 NF1P21359 2839 aa17.7■□□□□ 0.42
SS18-224ENST00000584083 CR1P17927 2039 aa17.69■□□□□ 0.42
SS18-224ENST00000584083 A0A087WUU8 490 aa17.69■□□□□ 0.42
SS18-224ENST00000584083 CENPBD1B2RD01 187 aa17.69■□□□□ 0.42
SS18-224ENST00000584083 B9A039 149 aa17.69■□□□□ 0.42
SS18-224ENST00000584083 DYNC1I1O14576 645 aa17.69■□□□□ 0.42
SS18-224ENST00000584083 PDE5AO76074 875 aa17.69■□□□□ 0.42
SS18-224ENST00000584083 PRSS23O95084 383 aa17.69■□□□□ 0.42
SS18-224ENST00000584083 ZNF14P17017 642 aaPredicted RBP17.69■□□□□ 0.42
SS18-224ENST00000584083 CTXN1P60606 82 aa17.69■□□□□ 0.42
SS18-224ENST00000584083 SNTB2Q13425 540 aaKnown RBP17.69■□□□□ 0.42
SS18-224ENST00000584083 DAG1Q14118 895 aa17.69■□□□□ 0.42
SS18-224ENST00000584083 HIST3H3Q16695 136 aa17.69■□□□□ 0.42
SS18-224ENST00000584083 ARMC4Q5T2S8 1044 aa17.69■□□□□ 0.42
SS18-224ENST00000584083 TBPL2Q6SJ96 375 aa17.69■□□□□ 0.42
SS18-224ENST00000584083 CLEC2AQ6UVW9 174 aa17.69■□□□□ 0.42
SS18-224ENST00000584083 MBOAT2Q6ZWT7 520 aa17.69■□□□□ 0.42
SS18-224ENST00000584083 MAPK1IP1LQ8NDC0 245 aa17.69■□□□□ 0.42
SS18-224ENST00000584083 OR4K5Q8NGD3 323 aa17.69■□□□□ 0.42
SS18-224ENST00000584083 FBXL3Q9UKT7 428 aa17.69■□□□□ 0.42
SS18-224ENST00000584083 V9GYQ6 96 aa17.69■□□□□ 0.42
SS18-224ENST00000584083 CSPG4Q6UVK1 2322 aa17.69■□□□□ 0.42
SS18-224ENST00000584083 TRAV27A0A087WT01 109 aa17.68■□□□□ 0.42
SS18-224ENST00000584083 NPIPB13A6NJU9 1138 aa17.68■□□□□ 0.42
SS18-224ENST00000584083 NPIPB4C9JG80 1138 aa17.68■□□□□ 0.42
SS18-224ENST00000584083 H1F0P07305 194 aaKnown RBP17.68■□□□□ 0.42
SS18-224ENST00000584083 NPR2P20594 1047 aa17.68■□□□□ 0.42
SS18-224ENST00000584083 GPR4P46093 362 aa17.68■□□□□ 0.42
SS18-224ENST00000584083 EFNA4P52798 201 aa17.68■□□□□ 0.42
SS18-224ENST00000584083 DSCR9P59020 149 aa17.68■□□□□ 0.42
SS18-224ENST00000584083 CD47Q08722 323 aa17.68■□□□□ 0.42
SS18-224ENST00000584083 RAB39AQ14964 217 aa17.68■□□□□ 0.42
SS18-224ENST00000584083 TAF11Q15544 211 aa17.68■□□□□ 0.42
SS18-224ENST00000584083 SAMD4BQ5PRF9 694 aaKnown RBP17.68■□□□□ 0.42
SS18-224ENST00000584083 KRT80Q6KB66 452 aa17.68■□□□□ 0.42
SS18-224ENST00000584083 DNM1P46Q6ZS02 220 aa17.68■□□□□ 0.42
SS18-224ENST00000584083 TSEN54Q7Z6J9 526 aaKnown RBP17.68■□□□□ 0.42
SS18-224ENST00000584083 IGFN1Q86VF2 1251 aa17.68■□□□□ 0.42
SS18-224ENST00000584083 OR13C2Q8NGS9 318 aa17.68■□□□□ 0.42
SS18-224ENST00000584083 FGFBP3Q8TAT2 258 aa17.68■□□□□ 0.42
SS18-224ENST00000584083 HDAC2Q92769 488 aaKnown RBP17.68■□□□□ 0.42
SS18-224ENST00000584083 ZNF75AQ96N20 296 aa17.68■□□□□ 0.42
SS18-224ENST00000584083 TNFRSF13CQ96RJ3 184 aa17.68■□□□□ 0.42
SS18-224ENST00000584083 CDRT15Q96T59 188 aa17.68■□□□□ 0.42
SS18-224ENST00000584083 SEPHS2Q99611 448 aa17.68■□□□□ 0.42
SS18-224ENST00000584083 VRK1Q99986 396 aaPredicted RBP17.68■□□□□ 0.42
SS18-224ENST00000584083 ANKRD19PQ9H560 264 aa17.68■□□□□ 0.42
SS18-224ENST00000584083 ZNF442Q9H7R0 627 aa17.68■□□□□ 0.42
SS18-224ENST00000584083 GORASP2Q9H8Y8 452 aa17.68■□□□□ 0.42
SS18-224ENST00000584083 RNF121Q9H920 327 aa17.68■□□□□ 0.42
SS18-224ENST00000584083 SPEF1Q9Y4P9 236 aa17.68■□□□□ 0.42
SS18-224ENST00000584083 TLN2Q9Y4G6 2542 aa17.68■□□□□ 0.42
SS18-224ENST00000584083 ZANQ9Y493 2812 aa17.67■□□□□ 0.42
SS18-224ENST00000584083 hCG_2039718K7EN88 272 aa17.67■□□□□ 0.42
SS18-224ENST00000584083 HSD17B1P14061 328 aa17.67■□□□□ 0.42
SS18-224ENST00000584083 RHCEP18577 417 aa17.67■□□□□ 0.42
SS18-224ENST00000584083 MSX2P35548 267 aaPredicted RBP17.67■□□□□ 0.42
SS18-224ENST00000584083 SLC9A3P48764 834 aa17.67■□□□□ 0.42
SS18-224ENST00000584083 RPL27P61353 136 aaKnown RBP17.67■□□□□ 0.42
SS18-224ENST00000584083 KRT72Q14CN4 511 aa17.67■□□□□ 0.42
SS18-224ENST00000584083 EFNB3Q15768 340 aa17.67■□□□□ 0.42
SS18-224ENST00000584083 ANKDD1AQ495B1 522 aa17.67■□□□□ 0.42
SS18-224ENST00000584083 FGD3Q5JSP0 725 aa17.67■□□□□ 0.42
SS18-224ENST00000584083 TMEM53Q6P2H8 277 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms