RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 CECR9P0C854 216 aa16.98■□□□□ 0.31
SS18-209ENST00000578595 NR2C1P13056 603 aa16.98■□□□□ 0.31
SS18-209ENST00000578595 CDKN1AP38936 164 aa16.98■□□□□ 0.31
SS18-209ENST00000578595 PTDSS1P48651 473 aaKnown RBP16.98■□□□□ 0.31
SS18-209ENST00000578595 PTH2RP49190 550 aa16.98■□□□□ 0.31
SS18-209ENST00000578595 RPL27P61353 136 aaKnown RBP16.98■□□□□ 0.31
SS18-209ENST00000578595 TRIM25Q14258 630 aaKnown RBP16.98■□□□□ 0.31
SS18-209ENST00000578595 SEC23BQ15437 767 aa16.98■□□□□ 0.31
SS18-209ENST00000578595 GSG1Q2KHT4 349 aa16.98■□□□□ 0.31
SS18-209ENST00000578595 ZBED5Q49AG3 693 aa16.98■□□□□ 0.31
SS18-209ENST00000578595 VHLLQ6RSH7 139 aa16.98■□□□□ 0.31
SS18-209ENST00000578595 NSMAFQ92636 917 aa16.98■□□□□ 0.31
SS18-209ENST00000578595 BOD1Q96IK1 185 aa16.98■□□□□ 0.31
SS18-209ENST00000578595 DHRS9Q9BPW9 319 aa16.98■□□□□ 0.31
SS18-209ENST00000578595 KATNB1Q9BVA0 655 aa16.98■□□□□ 0.31
SS18-209ENST00000578595 TAS2R1Q9NYW7 299 aa16.98■□□□□ 0.31
SS18-209ENST00000578595 ZNF346Q9UL40 294 aaKnown RBP16.98■□□□□ 0.31
SS18-209ENST00000578595 AKAP9Q99996 3911 aa16.97■□□□□ 0.31
SS18-209ENST00000578595 CDC42EP2O14613 210 aa16.97■□□□□ 0.31
SS18-209ENST00000578595 OR10H3O60404 316 aa16.97■□□□□ 0.31
SS18-209ENST00000578595 SLC2A10O95528 541 aa16.97■□□□□ 0.31
SS18-209ENST00000578595 CBR1P16152 277 aa16.97■□□□□ 0.31
SS18-209ENST00000578595 ARR3P36575 388 aa16.97■□□□□ 0.31
SS18-209ENST00000578595 ATP5J2P56134 94 aa16.97■□□□□ 0.31
SS18-209ENST00000578595 ERVK-25P63136 954 aa16.97■□□□□ 0.31
SS18-209ENST00000578595 FMODQ06828 376 aa16.97■□□□□ 0.31
SS18-209ENST00000578595 ANKDD1AQ495B1 522 aa16.97■□□□□ 0.31
SS18-209ENST00000578595 DNAL1Q4LDG9 190 aa16.97■□□□□ 0.31
SS18-209ENST00000578595 AGAP6Q5VW22 663 aa16.97■□□□□ 0.31
SS18-209ENST00000578595 LCN8Q6JVE9 175 aa16.97■□□□□ 0.31
SS18-209ENST00000578595 LRFN4Q6PJG9 635 aa16.97■□□□□ 0.31
SS18-209ENST00000578595 TMPRSS11FQ6ZWK6 438 aa16.97■□□□□ 0.31
SS18-209ENST00000578595 WFDC11Q8NEX6 87 aa16.97■□□□□ 0.31
SS18-209ENST00000578595 HDAC2Q92769 488 aaKnown RBP16.97■□□□□ 0.31
SS18-209ENST00000578595 MCHR2Q969V1 340 aa16.97■□□□□ 0.31
SS18-209ENST00000578595 TRMT61AQ96FX7 289 aaKnown RBP16.97■□□□□ 0.31
SS18-209ENST00000578595 RSRC1Q96IZ7 334 aaKnown RBP16.97■□□□□ 0.31
SS18-209ENST00000578595 TSPAN32Q96QS1 320 aa16.97■□□□□ 0.31
SS18-209ENST00000578595 TRIM15Q9C019 465 aa16.97■□□□□ 0.31
SS18-209ENST00000578595 C1orf21Q9H246 121 aa16.97■□□□□ 0.31
SS18-209ENST00000578595 RNF121Q9H920 327 aa16.97■□□□□ 0.31
SS18-209ENST00000578595 SEC61A2Q9H9S3 476 aa16.97■□□□□ 0.31
SS18-209ENST00000578595 TMEM38BQ9NVV0 291 aa16.97■□□□□ 0.31
SS18-209ENST00000578595 ZNF503-AS2A6NEH8 195 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 UNC119BA6NIH7 251 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 A6NIZ1 184 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 XKRYO14609 159 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 UBL3O95164 117 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 TSPAN19P0C672 248 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 DANCRP0C864 163 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 OR8G3PP0DMU2 310 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 RAP1BP61224 184 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 RAP1AP62834 184 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 ADAM8P78325 824 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 NAAAQ02083 359 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 CHRNB3Q05901 458 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 PGGHGQ32M88 737 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 FAM98BQ52LJ0 330 aaKnown RBP16.96■□□□□ 0.31
SS18-209ENST00000578595 ARMC4Q5T2S8 1044 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 SHEQ5VZ18 495 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 FAM205BPQ63HN1 556 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 PIWIL3Q7Z3Z3 882 aaKnown RBP16.96■□□□□ 0.31
SS18-209ENST00000578595 TGIF2LYQ8IUE0 185 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 LRRC75A-AS1Q8N1F1 130 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 SLC22A24Q8N4F4 322 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 ASB9Q96DX5 294 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 DHRS1Q96LJ7 313 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 ZNF570Q96NI8 536 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 RBP7Q96R05 134 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 SH3GL3Q99963 347 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 IL1RAPQ9NPH3 570 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 GRHPRQ9UBQ7 328 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 IL20RAQ9UHF4 553 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 ARFGEF3Q5TH69 2177 aa16.96■□□□□ 0.31
SS18-209ENST00000578595 SH3PXD2BA1X283 911 aa16.95■□□□□ 0.3
SS18-209ENST00000578595 NPIPB13A6NJU9 1138 aa16.95■□□□□ 0.3
SS18-209ENST00000578595 CENPBD1B2RD01 187 aa16.95■□□□□ 0.3
SS18-209ENST00000578595 NPIPB4C9JG80 1138 aa16.95■□□□□ 0.3
SS18-209ENST00000578595 H7C1C5 153 aa16.95■□□□□ 0.3
SS18-209ENST00000578595 NDUFB2O95178 105 aa16.95■□□□□ 0.3
SS18-209ENST00000578595 IGHMP01871 453 aa16.95■□□□□ 0.3
SS18-209ENST00000578595 IFNGR2P38484 337 aa16.95■□□□□ 0.3
SS18-209ENST00000578595 OMPP47874 163 aa16.95■□□□□ 0.3
SS18-209ENST00000578595 GIPRP48546 466 aa16.95■□□□□ 0.3
SS18-209ENST00000578595 LCN6P62502 163 aa16.95■□□□□ 0.3
SS18-209ENST00000578595 MS4A2Q01362 244 aa16.95■□□□□ 0.3
SS18-209ENST00000578595 YTHDF3Q7Z739 585 aaKnown RBP16.95■□□□□ 0.3
SS18-209ENST00000578595 MYPOPQ86VE0 399 aaPredicted RBP16.95■□□□□ 0.3
SS18-209ENST00000578595 SKA3Q8IX90 412 aa16.95■□□□□ 0.3
SS18-209ENST00000578595 MUC15Q8N387 334 aa16.95■□□□□ 0.3
SS18-209ENST00000578595 LRRC18Q8N456 261 aa16.95■□□□□ 0.3
SS18-209ENST00000578595 FANK1Q8TC84 345 aa16.95■□□□□ 0.3
SS18-209ENST00000578595 TRAF4Q9BUZ4 470 aaPredicted RBP16.95■□□□□ 0.3
SS18-209ENST00000578595 KCNN2Q9H2S1 579 aa16.95■□□□□ 0.3
SS18-209ENST00000578595 NOX3Q9HBY0 568 aa16.95■□□□□ 0.3
SS18-209ENST00000578595 CRNNQ9UBG3 495 aaPredicted RBP16.95■□□□□ 0.3
SS18-209ENST00000578595 ADAM18Q9Y3Q7 739 aa16.95■□□□□ 0.3
SS18-209ENST00000578595 A0A1W2PPL8 197 aa16.94■□□□□ 0.3
SS18-209ENST00000578595 TMCC2O75069 709 aa16.94■□□□□ 0.3
SS18-209ENST00000578595 IGKV3-15P01624 115 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms