RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 FGFBP3Q8TAT2 258 aa17.92■□□□□ 0.46
CLN3-219ENST00000565778 MCHR2Q969V1 340 aa17.92■□□□□ 0.46
CLN3-219ENST00000565778 FOXN4Q96NZ1 517 aa17.92■□□□□ 0.46
CLN3-219ENST00000565778 ZNF347Q96SE7 839 aa17.92■□□□□ 0.46
CLN3-219ENST00000565778 TMEM38BQ9NVV0 291 aa17.92■□□□□ 0.46
CLN3-219ENST00000565778 FBXL3Q9UKT7 428 aa17.92■□□□□ 0.46
CLN3-219ENST00000565778 A4GNTQ9UNA3 340 aa17.92■□□□□ 0.46
CLN3-219ENST00000565778 TLN2Q9Y4G6 2542 aa17.92■□□□□ 0.46
CLN3-219ENST00000565778 TMEM129A0AVI4 362 aa17.91■□□□□ 0.46
CLN3-219ENST00000565778 CXCR6O00574 342 aa17.91■□□□□ 0.46
CLN3-219ENST00000565778 ATP8B1O43520 1251 aa17.91■□□□□ 0.46
CLN3-219ENST00000565778 ZNF35P13682 527 aa17.91■□□□□ 0.46
CLN3-219ENST00000565778 ACADSP16219 412 aa17.91■□□□□ 0.46
CLN3-219ENST00000565778 DAP3P51398 398 aaKnown RBP17.91■□□□□ 0.46
CLN3-219ENST00000565778 ZNF84P51523 738 aa17.91■□□□□ 0.46
CLN3-219ENST00000565778 SLC7A2P52569 658 aa17.91■□□□□ 0.46
CLN3-219ENST00000565778 GALK2Q01415 458 aa17.91■□□□□ 0.46
CLN3-219ENST00000565778 FKBP9P1Q75LS8 142 aa17.91■□□□□ 0.46
CLN3-219ENST00000565778 HDDC2Q7Z4H3 204 aa17.91■□□□□ 0.46
CLN3-219ENST00000565778 VTCN1Q7Z7D3 282 aa17.91■□□□□ 0.46
CLN3-219ENST00000565778 ZCCHC24Q8N2G6 241 aaKnown RBP17.91■□□□□ 0.46
CLN3-219ENST00000565778 LIPHQ8WWY8 451 aa17.91■□□□□ 0.46
CLN3-219ENST00000565778 PRRC1Q96M27 445 aa17.91■□□□□ 0.46
CLN3-219ENST00000565778 PIMREGQ9BSJ6 248 aa17.91■□□□□ 0.46
CLN3-219ENST00000565778 FNDC11Q9BVV2 318 aa17.91■□□□□ 0.46
CLN3-219ENST00000565778 DYNLRB1Q9NP97 96 aa17.91■□□□□ 0.46
CLN3-219ENST00000565778 RHCGQ9UBD6 479 aa17.91■□□□□ 0.46
CLN3-219ENST00000565778 LOC390937A0A1W2PQ73 354 aa17.9■□□□□ 0.46
CLN3-219ENST00000565778 A8MV72 311 aaPredicted RBP17.9■□□□□ 0.46
CLN3-219ENST00000565778 NDUFS8O00217 210 aa17.9■□□□□ 0.46
CLN3-219ENST00000565778 PIP5K1CO60331 668 aa17.9■□□□□ 0.46
CLN3-219ENST00000565778 TRMUO75648 421 aaKnown RBP17.9■□□□□ 0.46
CLN3-219ENST00000565778 IFNW1P05000 195 aa17.9■□□□□ 0.46
CLN3-219ENST00000565778 SERPINA5P05154 406 aa17.9■□□□□ 0.46
CLN3-219ENST00000565778 IFI30P13284 250 aa17.9■□□□□ 0.46
CLN3-219ENST00000565778 LSP1P33241 339 aa17.9■□□□□ 0.46
CLN3-219ENST00000565778 LSM11P83369 360 aaKnown RBP eCLIP17.9■□□□□ 0.46
CLN3-219ENST00000565778 HIST3H3Q16695 136 aa17.9■□□□□ 0.46
CLN3-219ENST00000565778 TREML1Q86YW5 311 aa17.9■□□□□ 0.46
CLN3-219ENST00000565778 OR4K5Q8NGD3 323 aa17.9■□□□□ 0.46
CLN3-219ENST00000565778 ASB10Q8WXI3 467 aa17.9■□□□□ 0.46
CLN3-219ENST00000565778 BPIFA2Q96DR5 249 aa17.9■□□□□ 0.46
CLN3-219ENST00000565778 MRPL13Q9BYD1 178 aaKnown RBP17.9■□□□□ 0.46
CLN3-219ENST00000565778 MYOZ1Q9NP98 299 aaPredicted RBP17.9■□□□□ 0.46
CLN3-219ENST00000565778 SNX13Q9Y5W8 968 aa17.9■□□□□ 0.46
CLN3-219ENST00000565778 CR1P17927 2039 aa17.89■□□□□ 0.46
CLN3-219ENST00000565778 HTR3EA5X5Y0 456 aa17.89■□□□□ 0.45
CLN3-219ENST00000565778 NME4O00746 187 aa17.89■□□□□ 0.45
CLN3-219ENST00000565778 NDUFAB1O14561 156 aa17.89■□□□□ 0.45
CLN3-219ENST00000565778 NUDT2P50583 147 aa17.89■□□□□ 0.45
CLN3-219ENST00000565778 VLDLRP98155 873 aa17.89■□□□□ 0.45
CLN3-219ENST00000565778 GGTLC2Q14390 218 aa17.89■□□□□ 0.45
CLN3-219ENST00000565778 TRAM2Q15035 370 aa17.89■□□□□ 0.45
CLN3-219ENST00000565778 TMEM53Q6P2H8 277 aa17.89■□□□□ 0.45
CLN3-219ENST00000565778 SLC16A14Q7RTX9 510 aa17.89■□□□□ 0.45
CLN3-219ENST00000565778 CDK20Q8IZL9 346 aa17.89■□□□□ 0.45
CLN3-219ENST00000565778 NEU4Q8WWR8 484 aaPredicted RBP17.89■□□□□ 0.45
CLN3-219ENST00000565778 CMTM5Q96DZ9 223 aa17.89■□□□□ 0.45
CLN3-219ENST00000565778 STX18Q9P2W9 335 aaKnown RBP17.89■□□□□ 0.45
CLN3-219ENST00000565778 ADAM21Q9UKJ8 722 aa17.89■□□□□ 0.45
CLN3-219ENST00000565778 KIAA1324LA8MWY0 1029 aaPredicted RBP17.88■□□□□ 0.45
CLN3-219ENST00000565778 CENPBD1B2RD01 187 aa17.88■□□□□ 0.45
CLN3-219ENST00000565778 J3KTA2 159 aa17.88■□□□□ 0.45
CLN3-219ENST00000565778 ADRA2AP08913 450 aa17.88■□□□□ 0.45
CLN3-219ENST00000565778 TSPAN19P0C672 248 aa17.88■□□□□ 0.45
CLN3-219ENST00000565778 GLRXP35754 106 aa17.88■□□□□ 0.45
CLN3-219ENST00000565778 NR4A2P43354 598 aa17.88■□□□□ 0.45
CLN3-219ENST00000565778 GSK3BP49841 420 aa17.88■□□□□ 0.45
CLN3-219ENST00000565778 SEC24CP53992 1094 aa17.88■□□□□ 0.45
CLN3-219ENST00000565778 SLC36A2Q495M3 483 aa17.88■□□□□ 0.45
CLN3-219ENST00000565778 IQCCQ4KMZ1 466 aa17.88■□□□□ 0.45
CLN3-219ENST00000565778 IFI44LQ53G44 452 aa17.88■□□□□ 0.45
CLN3-219ENST00000565778 ALG10Q5BKT4 473 aa17.88■□□□□ 0.45
CLN3-219ENST00000565778 ARMC4Q5T2S8 1044 aa17.88■□□□□ 0.45
CLN3-219ENST00000565778 CYB5R2Q6BCY4 276 aa17.88■□□□□ 0.45
CLN3-219ENST00000565778 C8orf82Q6P1X6 216 aaPredicted RBP17.88■□□□□ 0.45
CLN3-219ENST00000565778 HACD2Q6Y1H2 254 aa17.88■□□□□ 0.45
CLN3-219ENST00000565778 CBLL1Q75N03 491 aa17.88■□□□□ 0.45
CLN3-219ENST00000565778 DPPA2Q7Z7J5 298 aa17.88■□□□□ 0.45
CLN3-219ENST00000565778 LRRC18Q8N456 261 aa17.88■□□□□ 0.45
CLN3-219ENST00000565778 ZNF540Q8NDQ6 660 aa17.88■□□□□ 0.45
CLN3-219ENST00000565778 NOXO1Q8NFA2 376 aa17.88■□□□□ 0.45
CLN3-219ENST00000565778 GEMIN6Q8WXD5 167 aaKnown RBP17.88■□□□□ 0.45
CLN3-219ENST00000565778 MRPL24Q96A35 216 aaKnown RBP17.88■□□□□ 0.45
CLN3-219ENST00000565778 KCNK17Q96T54 332 aa17.88■□□□□ 0.45
CLN3-219ENST00000565778 MRPL37Q9BZE1 423 aaKnown RBP17.88■□□□□ 0.45
CLN3-219ENST00000565778 FAM107BQ9H098 131 aa17.88■□□□□ 0.45
CLN3-219ENST00000565778 KCNN2Q9H2S1 579 aa17.88■□□□□ 0.45
CLN3-219ENST00000565778 TXNIPQ9H3M7 391 aa17.88■□□□□ 0.45
CLN3-219ENST00000565778 ARFGEF3Q5TH69 2177 aa17.88■□□□□ 0.45
CLN3-219ENST00000565778 VWC2LB2RUY7 222 aa17.87■□□□□ 0.45
CLN3-219ENST00000565778 SERPINA1P01009 418 aa17.87■□□□□ 0.45
CLN3-219ENST00000565778 SAGP10523 405 aaPredicted RBP17.87■□□□□ 0.45
CLN3-219ENST00000565778 DAOP14920 347 aa17.87■□□□□ 0.45
CLN3-219ENST00000565778 FUT4P22083 530 aa17.87■□□□□ 0.45
CLN3-219ENST00000565778 EVX1P49640 407 aa17.87■□□□□ 0.45
CLN3-219ENST00000565778 PLP2Q04941 152 aa17.87■□□□□ 0.45
CLN3-219ENST00000565778 HIPK1Q86Z02 1210 aa17.87■□□□□ 0.45
CLN3-219ENST00000565778 ZNF584Q8IVC4 421 aa17.87■□□□□ 0.45
CLN3-219ENST00000565778 FAM162AQ96A26 154 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms