RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 BCL10O95999 233 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 HLA-HP01893 362 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 QDPRP09417 244 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 RAP2AP10114 183 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 PSKH1P11801 424 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 B4GALT1P15291 398 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 PPP3CBP16298 524 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 CD53P19397 219 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 PRKACGP22612 351 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 ACVR1BP36896 505 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 CDKN2AP42771 156 aaKnown RBP8.03□□□□□ -1.12
VPS35-206ENST00000565228 CSNK1A1P48729 337 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 RPL27P61353 136 aaKnown RBP8.03□□□□□ -1.12
VPS35-206ENST00000565228 FLOT2Q14254 428 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 OR2T5Q6IEZ7 315 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 CYP4Z1Q86W10 505 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 SPATA24Q86W54 205 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 ZNF584Q8IVC4 421 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 SKA3Q8IX90 412 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 GPR137CQ8N3F9 429 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 C1orf162Q8NEQ5 155 aaPredicted RBP8.03□□□□□ -1.12
VPS35-206ENST00000565228 OR2T29Q8NH02 315 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 OR4Q3Q8NH05 313 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 HSD17B8Q92506 261 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 SLC25A44Q96H78 314 aaPredicted RBP8.03□□□□□ -1.12
VPS35-206ENST00000565228 FOXN4Q96NZ1 517 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 GPX7Q96SL4 187 aaPredicted RBP8.03□□□□□ -1.12
VPS35-206ENST00000565228 NRIP3Q9NQ35 241 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 CRNNQ9UBG3 495 aaPredicted RBP8.03□□□□□ -1.12
VPS35-206ENST00000565228 REV1Q9UBZ9 1251 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 AURKCQ9UQB9 309 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 PLEKHA6Q9Y2H5 1048 aa8.03□□□□□ -1.12
VPS35-206ENST00000565228 ARPC4-TTLL3A0A0A6YYG9 625 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 TEX13CA0A0J9YWL9 993 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 NPIPB13A6NJU9 1138 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 ZNF726A6NNF4 738 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 ZNF99A8MXY4 864 aaPredicted RBP8.02□□□□□ -1.13
VPS35-206ENST00000565228 NPIPB4C9JG80 1138 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 E7EQL1 145 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 H3BNX3 289 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 DHHO43323 396 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 OR10H3O60404 316 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 OR6A2O95222 327 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 ATE1O95260 518 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 IGLV1-44P01699 117 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 CD8AP01732 235 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 HIST1H2ABP04908 130 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 CD14P08571 375 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 CTLA4P16410 223 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 ITGA2P17301 1181 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 FPR3P25089 353 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 PEX19P40855 299 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 CHRNB3Q05901 458 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 TESK1Q15569 626 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 MICAQ29983 383 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 PGGHGQ32M88 737 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 RFX4Q33E94 735 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 FAM98BQ52LJ0 330 aaKnown RBP8.02□□□□□ -1.13
VPS35-206ENST00000565228 BEX5Q5H9J7 111 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 C10orf128Q5T292 105 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 ADAM5Q6NVV9 412 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 UGT2A3Q6UWM9 527 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 ZNF704Q6ZNC4 412 aaPredicted RBP8.02□□□□□ -1.13
VPS35-206ENST00000565228 ZNF620Q6ZNG0 422 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 HIST3H2AQ7L7L0 130 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 MDP1Q86V88 176 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 AQP11Q8NBQ7 271 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 OR6N1Q8NGY5 312 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 MAGEE2Q8TD90 523 aaPredicted RBP8.02□□□□□ -1.13
VPS35-206ENST00000565228 HIST1H2ACQ93077 130 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 ZNF566Q969W8 418 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 MCUR1Q96AQ8 359 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 DUS3LQ96G46 650 aaKnown RBP8.02□□□□□ -1.13
VPS35-206ENST00000565228 SAMD8Q96LT4 415 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 TSSK2Q96PF2 358 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 SH3GL3Q99963 347 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 ULBP2Q9BZM5 246 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 TRIM15Q9C019 465 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 OR52D1Q9H346 318 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 TMEM38BQ9NVV0 291 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 ZNF226Q9NYT6 803 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 IER3IP1Q9Y5U9 82 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 MTORP42345 2549 aa8.02□□□□□ -1.13
VPS35-206ENST00000565228 A0A1W2PRG6 482 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 SLC22A23A1A5C7 686 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 M0R1B8 84 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 BHLHE40O14503 412 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 CASKO14936 926 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 MGRN1O60291 552 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 CCNB2O95067 398 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 NDUFB2O95178 105 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 MPZL1O95297 269 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 SOX14O95416 240 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 TXNDC12O95881 172 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 CST1P01037 141 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 IGKV3-15P01624 115 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 SOD3P08294 240 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 MMP7P09237 267 aaPredicted RBP8.01□□□□□ -1.13
VPS35-206ENST00000565228 CECR9P0C854 216 aa8.01□□□□□ -1.13
VPS35-206ENST00000565228 DANCRP0C864 163 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms