RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 TSPO2Q5TGU0 170 aa18.23■□□□□ 0.51
CLN3-212ENST00000564574 FBXW9Q5XUX1 488 aa18.23■□□□□ 0.51
CLN3-212ENST00000564574 MRGPRGQ86SM5 289 aa18.23■□□□□ 0.51
CLN3-212ENST00000564574 CCDC71Q8IV32 467 aaPredicted RBP18.23■□□□□ 0.51
CLN3-212ENST00000564574 NPEPL1Q8NDH3 523 aa18.23■□□□□ 0.51
CLN3-212ENST00000564574 SDR9C7Q8NEX9 313 aa18.23■□□□□ 0.51
CLN3-212ENST00000564574 TRUB1Q8WWH5 349 aaKnown RBP18.23■□□□□ 0.51
CLN3-212ENST00000564574 NMNAT3Q96T66 252 aa18.23■□□□□ 0.51
CLN3-212ENST00000564574 DDOQ99489 341 aa18.23■□□□□ 0.51
CLN3-212ENST00000564574 APOL4Q9BPW4 351 aa18.23■□□□□ 0.51
CLN3-212ENST00000564574 ASB6Q9NWX5 421 aa18.23■□□□□ 0.51
CLN3-212ENST00000564574 MALT1Q9UDY8 824 aa18.23■□□□□ 0.51
CLN3-212ENST00000564574 RPL36A-HNRNPH2H7BZ11 118 aa18.22■□□□□ 0.51
CLN3-212ENST00000564574 UPK3AO75631 287 aa18.22■□□□□ 0.51
CLN3-212ENST00000564574 KRT33AO76009 404 aa18.22■□□□□ 0.51
CLN3-212ENST00000564574 SLC2A10O95528 541 aa18.22■□□□□ 0.51
CLN3-212ENST00000564574 BMP5P22003 454 aa18.22■□□□□ 0.51
CLN3-212ENST00000564574 PAICSP22234 425 aaKnown RBP18.22■□□□□ 0.51
CLN3-212ENST00000564574 EDNRAP25101 427 aa18.22■□□□□ 0.51
CLN3-212ENST00000564574 SLC25A35Q3KQZ1 300 aa18.22■□□□□ 0.51
CLN3-212ENST00000564574 DNM1P34Q6PK57 102 aa18.22■□□□□ 0.51
CLN3-212ENST00000564574 BEND4Q6ZU67 534 aa18.22■□□□□ 0.51
CLN3-212ENST00000564574 ZC3HAV1Q7Z2W4 902 aaKnown RBP18.22■□□□□ 0.51
CLN3-212ENST00000564574 SYT14Q8NB59 555 aa18.22■□□□□ 0.51
CLN3-212ENST00000564574 OR8J1Q8NGP2 316 aa18.22■□□□□ 0.51
CLN3-212ENST00000564574 FAM81AQ8TBF8 368 aa18.22■□□□□ 0.51
CLN3-212ENST00000564574 TFAP2CQ92754 450 aa18.22■□□□□ 0.51
CLN3-212ENST00000564574 NMD3Q96D46 503 aaKnown RBP18.22■□□□□ 0.51
CLN3-212ENST00000564574 ULBP2Q9BZM5 246 aa18.22■□□□□ 0.51
CLN3-212ENST00000564574 SLC7A10Q9NS82 523 aa18.22■□□□□ 0.51
CLN3-212ENST00000564574 IMPAD1Q9NX62 359 aa18.22■□□□□ 0.51
CLN3-212ENST00000564574 PRSS50Q9UI38 385 aa18.22■□□□□ 0.51
CLN3-212ENST00000564574 HIVEP3Q5T1R4 2406 aa18.21■□□□□ 0.51
CLN3-212ENST00000564574 ZNF587BE7ETH6 402 aa18.21■□□□□ 0.51
CLN3-212ENST00000564574 H7C1C5 153 aa18.21■□□□□ 0.51
CLN3-212ENST00000564574 M0R3G1 203 aa18.21■□□□□ 0.51
CLN3-212ENST00000564574 MPZL2O60487 215 aa18.21■□□□□ 0.51
CLN3-212ENST00000564574 SMNDC1O75940 238 aaKnown RBP eCLIP18.21■□□□□ 0.51
CLN3-212ENST00000564574 AGAP20933 346 aa18.21■□□□□ 0.51
CLN3-212ENST00000564574 CRABP1P29762 137 aa18.21■□□□□ 0.51
CLN3-212ENST00000564574 SLC25A1P53007 311 aa18.21■□□□□ 0.51
CLN3-212ENST00000564574 LCN6P62502 163 aa18.21■□□□□ 0.51
CLN3-212ENST00000564574 EFNB1P98172 346 aa18.21■□□□□ 0.51
CLN3-212ENST00000564574 CRMP1Q14194 572 aa18.21■□□□□ 0.51
CLN3-212ENST00000564574 C10orf128Q5T292 105 aa18.21■□□□□ 0.51
CLN3-212ENST00000564574 Q6ZT83 130 aa18.21■□□□□ 0.51
CLN3-212ENST00000564574 UBE2J2Q8N2K1 259 aa18.21■□□□□ 0.51
CLN3-212ENST00000564574 SETD9Q8NE22 299 aa18.21■□□□□ 0.51
CLN3-212ENST00000564574 TMEM163Q8TC26 289 aa18.21■□□□□ 0.51
CLN3-212ENST00000564574 MCHR2Q969V1 340 aa18.21■□□□□ 0.51
CLN3-212ENST00000564574 ZNF184Q99676 751 aaPredicted RBP18.21■□□□□ 0.51
CLN3-212ENST00000564574 SYT4Q9H2B2 425 aa18.21■□□□□ 0.51
CLN3-212ENST00000564574 JKAMPQ9P055 326 aa18.21■□□□□ 0.51
CLN3-212ENST00000564574 FKBP7Q9Y680 259 aa18.21■□□□□ 0.51
CLN3-212ENST00000564574 OR6C68A6NDL8 312 aa18.2■□□□□ 0.5
CLN3-212ENST00000564574 PRR23D1E9PI22 279 aaPredicted RBP18.2■□□□□ 0.5
CLN3-212ENST00000564574 PRKYO43930 277 aa18.2■□□□□ 0.5
CLN3-212ENST00000564574 QDPRP09417 244 aa18.2■□□□□ 0.5
CLN3-212ENST00000564574 PRR23D2P0DMB1 279 aaPredicted RBP18.2■□□□□ 0.5
CLN3-212ENST00000564574 PHYHD1Q5SRE7 291 aa18.2■□□□□ 0.5
CLN3-212ENST00000564574 ZNF691Q5VV52 312 aa18.2■□□□□ 0.5
CLN3-212ENST00000564574 SLC25A47Q6Q0C1 308 aa18.2■□□□□ 0.5
CLN3-212ENST00000564574 LIX1LQ8IVB5 337 aa18.2■□□□□ 0.5
CLN3-212ENST00000564574 TCEANCQ8N8B7 351 aa18.2■□□□□ 0.5
CLN3-212ENST00000564574 ZNF610Q8N9Z0 462 aa18.2■□□□□ 0.5
CLN3-212ENST00000564574 RELL2Q8NC24 303 aaPredicted RBP18.2■□□□□ 0.5
CLN3-212ENST00000564574 ALKBH3Q96Q83 286 aaPredicted RBP18.2■□□□□ 0.5
CLN3-212ENST00000564574 NMNAT2Q9BZQ4 307 aa18.2■□□□□ 0.5
CLN3-212ENST00000564574 OPN3Q9H1Y3 402 aaPredicted RBP18.2■□□□□ 0.5
CLN3-212ENST00000564574 GPR35Q9HC97 309 aa18.2■□□□□ 0.5
CLN3-212ENST00000564574 RAB26Q9ULW5 256 aa18.2■□□□□ 0.5
CLN3-212ENST00000564574 HSPE1-MOB4S4R3N1 261 aa18.2■□□□□ 0.5
CLN3-212ENST00000564574 A8MXE2 369 aa18.19■□□□□ 0.5
CLN3-212ENST00000564574 PYCARD-AS1I3L0S3 204 aa18.19■□□□□ 0.5
CLN3-212ENST00000564574 DHHO43323 396 aa18.19■□□□□ 0.5
CLN3-212ENST00000564574 KHDRBS3O75525 346 aaKnown RBP18.19■□□□□ 0.5
CLN3-212ENST00000564574 IGHV3-9P01782 118 aa18.19■□□□□ 0.5
CLN3-212ENST00000564574 ZNF84P51523 738 aa18.19■□□□□ 0.5
CLN3-212ENST00000564574 SNRPGP62308 76 aaKnown RBP18.19■□□□□ 0.5
CLN3-212ENST00000564574 ROR2Q01974 943 aaKnown RBP18.19■□□□□ 0.5
CLN3-212ENST00000564574 FAPQ12884 760 aa18.19■□□□□ 0.5
CLN3-212ENST00000564574 LRFN4Q6PJG9 635 aa18.19■□□□□ 0.5
CLN3-212ENST00000564574 XKRXQ6PP77 449 aa18.19■□□□□ 0.5
CLN3-212ENST00000564574 USP51Q70EK9 711 aa18.19■□□□□ 0.5
CLN3-212ENST00000564574 CXXC5Q7LFL8 322 aaKnown RBP18.19■□□□□ 0.5
CLN3-212ENST00000564574 ZBTB46Q86UZ6 589 aa18.19■□□□□ 0.5
CLN3-212ENST00000564574 ZNF808Q8N4W9 903 aaPredicted RBP18.19■□□□□ 0.5
CLN3-212ENST00000564574 CYB561A3Q8NBI2 242 aa18.19■□□□□ 0.5
CLN3-212ENST00000564574 OR2T4Q8NH00 348 aa18.19■□□□□ 0.5
CLN3-212ENST00000564574 LILRB4Q8NHJ6 448 aa18.19■□□□□ 0.5
CLN3-212ENST00000564574 NUAK2Q9H093 628 aa18.19■□□□□ 0.5
CLN3-212ENST00000564574 RACGAP1Q9H0H5 632 aa18.19■□□□□ 0.5
CLN3-212ENST00000564574 HINT3Q9NQE9 182 aaKnown RBP18.19■□□□□ 0.5
CLN3-212ENST00000564574 RPRD1BQ9NQG5 326 aaKnown RBP18.19■□□□□ 0.5
CLN3-212ENST00000564574 GPR52Q9Y2T5 361 aa18.19■□□□□ 0.5
CLN3-212ENST00000564574 PCNX1Q96RV3 2341 aa18.18■□□□□ 0.5
CLN3-212ENST00000564574 EEF1E1-BLOC1S5C9J1V9 151 aa18.18■□□□□ 0.5
CLN3-212ENST00000564574 EEF1E1O43324 174 aaKnown RBP18.18■□□□□ 0.5
CLN3-212ENST00000564574 TLX2O43763 284 aaPredicted RBP18.18■□□□□ 0.5
CLN3-212ENST00000564574 SLC16A7O60669 478 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms