RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 B4GALT1P15291 398 aa11.66□□□□□ -0.54
CLK3-213ENST00000563842 MAKP20794 623 aa11.66□□□□□ -0.54
CLK3-213ENST00000563842 CTXN1P60606 82 aa11.66□□□□□ -0.54
CLK3-213ENST00000563842 RPL27P61353 136 aaKnown RBP11.66□□□□□ -0.54
CLK3-213ENST00000563842 VLDLRP98155 873 aa11.66□□□□□ -0.54
CLK3-213ENST00000563842 NAAAQ02083 359 aa11.66□□□□□ -0.54
CLK3-213ENST00000563842 CHRNB3Q05901 458 aa11.66□□□□□ -0.54
CLK3-213ENST00000563842 SPOCK1Q08629 439 aa11.66□□□□□ -0.54
CLK3-213ENST00000563842 HIST3H3Q16695 136 aa11.66□□□□□ -0.54
CLK3-213ENST00000563842 NRN1LQ496H8 165 aa11.66□□□□□ -0.54
CLK3-213ENST00000563842 LRFN4Q6PJG9 635 aa11.66□□□□□ -0.54
CLK3-213ENST00000563842 MUC15Q8N387 334 aa11.66□□□□□ -0.54
CLK3-213ENST00000563842 WFDC11Q8NEX6 87 aa11.66□□□□□ -0.54
CLK3-213ENST00000563842 NOXO1Q8NFA2 376 aa11.66□□□□□ -0.54
CLK3-213ENST00000563842 OR51A7Q8NH64 312 aa11.66□□□□□ -0.54
CLK3-213ENST00000563842 MOSPD2Q8NHP6 518 aa11.66□□□□□ -0.54
CLK3-213ENST00000563842 SLC7A13Q8TCU3 470 aa11.66□□□□□ -0.54
CLK3-213ENST00000563842 ZNF347Q96SE7 839 aa11.66□□□□□ -0.54
CLK3-213ENST00000563842 BDH2Q9BUT1 245 aa11.66□□□□□ -0.54
CLK3-213ENST00000563842 MRPL13Q9BYD1 178 aaKnown RBP11.66□□□□□ -0.54
CLK3-213ENST00000563842 C1orf21Q9H246 121 aa11.66□□□□□ -0.54
CLK3-213ENST00000563842 BARX1Q9HBU1 254 aaPredicted RBP11.66□□□□□ -0.54
CLK3-213ENST00000563842 ACTR3BQ9P1U1 418 aa11.66□□□□□ -0.54
CLK3-213ENST00000563842 PRPF19Q9UMS4 504 aaKnown RBP11.66□□□□□ -0.54
CLK3-213ENST00000563842 AURKCQ9UQB9 309 aa11.66□□□□□ -0.54
CLK3-213ENST00000563842 RTTNQ86VV8 2226 aa11.66□□□□□ -0.54
CLK3-213ENST00000563842 MTORP42345 2549 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 A6NIZ1 184 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 ATP6V1G2-DDX39BF2Z307 99 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 hCG_2039718K7EN88 272 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 SEC14L2O76054 403 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 GADD45GO95257 159 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 RAB36O95755 333 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 IGHMP01871 453 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 CECR9P0C854 216 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 MSX2P35548 267 aaPredicted RBP11.65□□□□□ -0.54
CLK3-213ENST00000563842 GUCA1AP43080 201 aaPredicted RBP11.65□□□□□ -0.54
CLK3-213ENST00000563842 IDH3GP51553 393 aaPredicted RBP11.65□□□□□ -0.54
CLK3-213ENST00000563842 RAP1BP61224 184 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 RAP1AP62834 184 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 NPRL3Q12980 569 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 ZBED5Q49AG3 693 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 ARMC4Q5T2S8 1044 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 PODNL1Q6PEZ8 512 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 TSEN54Q7Z6J9 526 aaKnown RBP11.65□□□□□ -0.54
CLK3-213ENST00000563842 MDP1Q86V88 176 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 WDFY1Q8IWB7 410 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 SLC22A24Q8N4F4 322 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 SYT14Q8NB59 555 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 MCHR2Q969V1 340 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 DHRS1Q96LJ7 313 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 RBP7Q96R05 134 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 TNFRSF13CQ96RJ3 184 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 SEPHS2Q99611 448 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 ALG12Q9BV10 488 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 KCNN2Q9H2S1 579 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 SMURF2Q9HAU4 748 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 IL1RAPQ9NPH3 570 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 TMEM38BQ9NVV0 291 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 B3GNT2Q9NY97 397 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 FBXO9Q9UK97 447 aaPredicted RBP11.65□□□□□ -0.54
CLK3-213ENST00000563842 PMF1-BGLAPU3KQ54 211 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 V9GYQ6 96 aa11.65□□□□□ -0.54
CLK3-213ENST00000563842 CHD3Q12873 2000 aaKnown RBP11.64□□□□□ -0.55
CLK3-213ENST00000563842 TRAV27A0A087WT01 109 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 PDE5AO76074 875 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 PTHP01270 115 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 CD8AP01732 235 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 HLA-HP01893 362 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 SEMG1P04279 462 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 NPR2P20594 1047 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 RPL4P36578 427 aaKnown RBP11.64□□□□□ -0.55
CLK3-213ENST00000563842 ACVR1BP36896 505 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 IFNGR2P38484 337 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 GPR4P46093 362 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 ZNF133P52736 654 aaPredicted RBP11.64□□□□□ -0.55
CLK3-213ENST00000563842 RAB1AP62820 205 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 LSM11P83369 360 aaKnown RBP eCLIP11.64□□□□□ -0.55
CLK3-213ENST00000563842 SPIBQ01892 262 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 CD47Q08722 323 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 TOP3AQ13472 1001 aaPredicted RBP11.64□□□□□ -0.55
CLK3-213ENST00000563842 TRIM25Q14258 630 aaKnown RBP11.64□□□□□ -0.55
CLK3-213ENST00000563842 SLC36A2Q495M3 483 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 THEM4Q5T1C6 240 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 C10orf128Q5T292 105 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 TMEM53Q6P2H8 277 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 TBPL2Q6SJ96 375 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 B3GLCTQ6Y288 498 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 TRPM8Q7Z2W7 1104 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 KRTAP1-3Q8IUG1 177 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 ZDHHC21Q8IVQ6 265 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 FAM86B1Q8N7N1 296 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 NUP37Q8NFH4 326 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 Q96MF0 132 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 GRHPRQ9UBQ7 328 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 ZNF346Q9UL40 294 aaKnown RBP11.64□□□□□ -0.55
CLK3-213ENST00000563842 TMCC3Q9ULS5 477 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 SPEF1Q9Y4P9 236 aa11.64□□□□□ -0.55
CLK3-213ENST00000563842 NAV3Q8IVL0 2385 aa11.63□□□□□ -0.55
CLK3-213ENST00000563842 AHCYL1O43865 530 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms