RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 SGCEO43556 437 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 RORCP51449 518 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 FMODQ06828 376 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 FAM198BQ6UWH4 519 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 TMEM179BQ7Z7N9 219 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 LSRQ86X29 649 aaPredicted RBP8.34□□□□□ -1.07
VPS39-205ENST00000562258 SLC15A4Q8N697 577 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 SAMD12Q8N8I0 201 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 OR13C9Q8NGT0 318 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 ABHD4Q8TB40 342 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 FBXO17Q96EF6 278 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 UCN2Q96RP3 112 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 FER1L5A0AVI2 2057 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 MTCL1Q9Y4B5 1905 aaKnown RBP8.34□□□□□ -1.07
VPS39-205ENST00000562258 NOS1APO75052 506 aaPredicted RBP8.34□□□□□ -1.07
VPS39-205ENST00000562258 GABRA2P47869 451 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 RAB25P57735 213 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 LSM11P83369 360 aaKnown RBP eCLIP8.34□□□□□ -1.077e-7■■□□□ 12.4
VPS39-205ENST00000562258 CBX3Q13185 183 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 PRSS53Q2L4Q9 553 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 NHSL2Q5HYW2 709 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 MAMSTRQ6ZN01 415 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 MOB3CQ70IA8 216 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 SLC46A3Q7Z3Q1 461 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 SLC43A2Q8N370 569 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 SUMF1Q8NBK3 374 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 OR5L1Q8NGL2 311 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 ABHD3Q8WU67 409 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 RAB2BQ8WUD1 216 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 SLC25A44Q96H78 314 aaPredicted RBP8.34□□□□□ -1.07
VPS39-205ENST00000562258 OXGR1Q96P68 337 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 MOGAT1Q96PD6 335 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 NYNRINQ9P2P1 1898 aaKnown RBP8.34□□□□□ -1.07
VPS39-205ENST00000562258 C5orf49A4QMS7 147 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 ACOD1A6NK06 481 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 SMAD9O15198 467 aaKnown RBP8.34□□□□□ -1.07
VPS39-205ENST00000562258 TBX19O60806 448 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 MPIG6BO95866 241 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 GRPP07492 148 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 ZNF44P15621 663 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 THBS2P35442 1172 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 ZNF83P51522 516 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 RAC1P63000 192 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 TCF15Q12870 199 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 RSU1Q15404 277 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 SCGB2B2Q4G0G5 96 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 SPIN3Q5JUX0 258 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 HES5Q5TA89 166 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 TRAPPC6BQ86SZ2 158 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 CCDC71Q8IV32 467 aaPredicted RBP8.34□□□□□ -1.07
VPS39-205ENST00000562258 TMEM251Q8N6I4 163 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 FAM83FQ8NEG4 500 aaPredicted RBP8.34□□□□□ -1.07
VPS39-205ENST00000562258 ADAMTS14Q8WXS8 1223 aa8.34□□□□□ -1.07
VPS39-205ENST00000562258 PAQR5Q9NXK6 330 aaPredicted RBP8.34□□□□□ -1.07
VPS39-205ENST00000562258 NAV3Q8IVL0 2385 aa8.34□□□□□ -1.08
VPS39-205ENST00000562258 A0A087WZY1 265 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 A0A1B0GVC2 190 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 ANKRD61A6NGH8 418 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 DHHO43323 396 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 ZNF182P17025 639 aaPredicted RBP8.33□□□□□ -1.08
VPS39-205ENST00000562258 PRSS12P56730 875 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 CLDN20P56880 219 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 ALKBH6Q3KRA9 238 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 PLCXD3Q63HM9 321 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 PLXDC2Q6UX71 529 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 ZNF620Q6ZNG0 422 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 PGAP1Q75T13 922 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 ASCC1Q8N9N2 400 aaKnown RBP8.33□□□□□ -1.08
VPS39-205ENST00000562258 GPR148Q8TDV2 347 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 TFAP2CQ92754 450 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 YTHDF1Q9BYJ9 559 aaKnown RBP8.33□□□□□ -1.08
VPS39-205ENST00000562258 FKRPQ9H9S5 495 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 HHLA2Q9UM44 414 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 ANAPC1Q9H1A4 1944 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 HLA-HP01893 362 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 TNFSF4P23510 183 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 FKBP2P26885 142 aaKnown RBP8.33□□□□□ -1.08
VPS39-205ENST00000562258 S100GP29377 79 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 WNT4P56705 351 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 ZFP36L1Q07352 338 aaKnown RBP8.33□□□□□ -1.08
VPS39-205ENST00000562258 PMPCAQ10713 525 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 ZNF227Q86WZ6 799 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 SPACA3Q8IXA5 215 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 GJC3Q8NFK1 279 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 CAPSLQ8WWF8 208 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 TXNDC15Q96J42 360 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 NEDD4LQ96PU5 975 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 ATG5Q9H1Y0 275 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 PRRC2CQ9Y520 2896 aaKnown RBP8.33□□□□□ -1.08
VPS39-205ENST00000562258 PLXNA3P51805 1871 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 P2RY10O00398 339 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 HSPB6O14558 160 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 EFSO43281 561 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 IGKV1D-16P01601 117 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 COX6A1P12074 109 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 ZNF35P13682 527 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 FAM205BPQ63HN1 556 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 PIWIL3Q7Z3Z3 882 aaKnown RBP8.33□□□□□ -1.08
VPS39-205ENST00000562258 OR6V1Q8N148 313 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 TTTY12Q9BZ98 90 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms