RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 IGHV2-5P01817 119 aa14□□□□□ -0.17
CLN3-208ENST00000561505 THY1P04216 161 aa14□□□□□ -0.17
CLN3-208ENST00000561505 PATE4P0C8F1 98 aa14□□□□□ -0.17
CLN3-208ENST00000561505 LSP1P33241 339 aa14□□□□□ -0.17
CLN3-208ENST00000561505 ZNF74Q16587 644 aa14□□□□□ -0.17
CLN3-208ENST00000561505 PAGE3Q5JUK9 113 aa14□□□□□ -0.17
CLN3-208ENST00000561505 FAHD2BQ6P2I3 314 aaPredicted RBP14□□□□□ -0.17
CLN3-208ENST00000561505 SLC35D2Q76EJ3 337 aa14□□□□□ -0.17
CLN3-208ENST00000561505 ANKRD42Q8N9B4 389 aa14□□□□□ -0.17
CLN3-208ENST00000561505 SLC30A7Q8NEW0 376 aa14□□□□□ -0.17
CLN3-208ENST00000561505 FAHD2AQ96GK7 314 aa14□□□□□ -0.17
CLN3-208ENST00000561505 ZNF607Q96SK3 696 aa14□□□□□ -0.17
CLN3-208ENST00000561505 ARHGDIGQ99819 225 aa14□□□□□ -0.17
CLN3-208ENST00000561505 MRPL13Q9BYD1 178 aaKnown RBP14□□□□□ -0.17
CLN3-208ENST00000561505 NARFLQ9H6Q4 476 aa14□□□□□ -0.17
CLN3-208ENST00000561505 LPAR2Q9HBW0 351 aa14□□□□□ -0.17
CLN3-208ENST00000561505 SLCO1B3Q9NPD5 702 aa14□□□□□ -0.17
CLN3-208ENST00000561505 SLCO1C1Q9NYB5 712 aa14□□□□□ -0.17
CLN3-208ENST00000561505 SELENONQ9NZV5 590 aa14□□□□□ -0.17
CLN3-208ENST00000561505 TAAR3PQ9P1P4 343 aa14□□□□□ -0.17
CLN3-208ENST00000561505 GPR160Q9UJ42 338 aa14□□□□□ -0.17
CLN3-208ENST00000561505 FZR1Q9UM11 496 aa14□□□□□ -0.17
CLN3-208ENST00000561505 SERPINB7O75635 380 aa13.99□□□□□ -0.17
CLN3-208ENST00000561505 ADH4P08319 380 aa13.99□□□□□ -0.17
CLN3-208ENST00000561505 MMP7P09237 267 aaPredicted RBP13.99□□□□□ -0.17
CLN3-208ENST00000561505 PGA4P0DJD7 388 aa13.99□□□□□ -0.17
CLN3-208ENST00000561505 PGA3P0DJD8 388 aa13.99□□□□□ -0.17
CLN3-208ENST00000561505 ADORA3P0DMS8 318 aa13.99□□□□□ -0.17
CLN3-208ENST00000561505 UCP2P55851 309 aa13.99□□□□□ -0.17
CLN3-208ENST00000561505 KLF3P57682 345 aaPredicted RBP13.99□□□□□ -0.17
CLN3-208ENST00000561505 SCARB2Q14108 478 aa13.99□□□□□ -0.17
CLN3-208ENST00000561505 SHQ1Q6PI26 577 aaKnown RBP13.99□□□□□ -0.17
CLN3-208ENST00000561505 ZDHHC22Q8N966 263 aa13.99□□□□□ -0.17
CLN3-208ENST00000561505 HIPK4Q8NE63 616 aa13.99□□□□□ -0.17
CLN3-208ENST00000561505 SYNPRQ8TBG9 265 aa13.99□□□□□ -0.17
CLN3-208ENST00000561505 GCDHQ92947 438 aaPredicted RBP13.99□□□□□ -0.17
CLN3-208ENST00000561505 TSPAN32Q96QS1 320 aa13.99□□□□□ -0.17
CLN3-208ENST00000561505 USH1CQ9Y6N9 552 aa13.99□□□□□ -0.17
CLN3-208ENST00000561505 PPIAL4EA0A075B759 164 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 LOC105371242A0A075B767 164 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 PPIAL4CA0A0B4J2A2 164 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 A0A1W2PPW3 197 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 CENPBD1B2RD01 187 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 PPIAL4DF5H284 164 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 ZNF500O60304 480 aaPredicted RBP13.98□□□□□ -0.17
CLN3-208ENST00000561505 TGDSO95455 350 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 ASAH2BP0C7U1 165 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 PPIAL4FP0DN26 164 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 AHCYP23526 432 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 GATA3P23771 443 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 SLC6A2P23975 617 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 RAD52P43351 418 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 SELENOVP59797 346 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 NCALDP61601 193 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 ACTG1P63261 375 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 CCL8P80075 99 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 TEKQ02763 1124 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 NPTX1Q15818 432 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 DUSP7Q16829 419 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 NKPD1Q17RQ9 610 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 DLEU7Q6UYE1 221 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 RANBP3LQ86VV4 465 aaPredicted RBP13.98□□□□□ -0.17
CLN3-208ENST00000561505 PTOV1Q86YD1 416 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 ARMC8Q8IUR7 673 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 C3orf56Q8N813 242 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 C11orf40Q8WZ69 217 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 ZNF566Q969W8 418 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 RAB39BQ96DA2 213 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 SPDL1Q96EA4 605 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 SH3GL3Q99963 347 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 SUCNR1Q9BXA5 334 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 BCL2L14Q9BZR8 327 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 SLC19A3Q9BZV2 496 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 PCDHAC1Q9H158 963 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 CENPHQ9H3R5 247 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 ESM1Q9NQ30 184 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 OPN4Q9UHM6 478 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 ZNF229Q9UJW7 825 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 TRIM33Q9UPN9 1127 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 CORO2BQ9UQ03 480 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 WIPI2Q9Y4P8 454 aa13.98□□□□□ -0.17
CLN3-208ENST00000561505 IGHV1-69-2A0A0G2JMI3 117 aa13.97□□□□□ -0.17
CLN3-208ENST00000561505 A0A0G2JMP0 313 aa13.97□□□□□ -0.17
CLN3-208ENST00000561505 A0A0X1KG70 313 aa13.97□□□□□ -0.17
CLN3-208ENST00000561505 ICMTO60725 284 aa13.97□□□□□ -0.17
CLN3-208ENST00000561505 MPZL1O95297 269 aa13.97□□□□□ -0.17
CLN3-208ENST00000561505 PTHP01270 115 aa13.97□□□□□ -0.17
CLN3-208ENST00000561505 TSPAN19P0C672 248 aa13.97□□□□□ -0.17
CLN3-208ENST00000561505 ERVS71-1P61550 626 aa13.97□□□□□ -0.17
CLN3-208ENST00000561505 RBBP4Q09028 425 aa13.97□□□□□ -0.17
CLN3-208ENST00000561505 MOGQ16653 247 aa13.97□□□□□ -0.17
CLN3-208ENST00000561505 FAM209AQ5JX71 171 aa13.97□□□□□ -0.17
CLN3-208ENST00000561505 PRR31Q5SQ13 230 aa13.97□□□□□ -0.17
CLN3-208ENST00000561505 TMEM154Q6P9G4 183 aa13.97□□□□□ -0.17
CLN3-208ENST00000561505 TSPYL5Q86VY4 417 aaPredicted RBP13.97□□□□□ -0.17
CLN3-208ENST00000561505 GPR32P1Q8NGA4 272 aa13.97□□□□□ -0.17
CLN3-208ENST00000561505 OR4M2Q8NGB6 313 aa13.97□□□□□ -0.17
CLN3-208ENST00000561505 OR1J2Q8NGS2 313 aa13.97□□□□□ -0.17
CLN3-208ENST00000561505 DVL3Q92997 716 aaPredicted RBP13.97□□□□□ -0.17
CLN3-208ENST00000561505 TLCD1Q96CP7 247 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms