RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 TREML1Q86YW5 311 aa7.85□□□□□ -1.15
HDDC3-204ENST00000559834 HIPK4Q8NE63 616 aa7.85□□□□□ -1.15
HDDC3-204ENST00000559834 SLC30A7Q8NEW0 376 aa7.85□□□□□ -1.15
HDDC3-204ENST00000559834 ZNF519Q8TB69 540 aa7.85□□□□□ -1.15
HDDC3-204ENST00000559834 TMEM54Q969K7 222 aa7.85□□□□□ -1.15
HDDC3-204ENST00000559834 YIPF5Q969M3 257 aa7.85□□□□□ -1.15
HDDC3-204ENST00000559834 TIMD4Q96H15 378 aa7.85□□□□□ -1.15
HDDC3-204ENST00000559834 SLC25A44Q96H78 314 aaPredicted RBP7.85□□□□□ -1.15
HDDC3-204ENST00000559834 MCHR1Q99705 422 aa7.85□□□□□ -1.15
HDDC3-204ENST00000559834 RSPO3Q9BXY4 272 aaPredicted RBP7.85□□□□□ -1.15
HDDC3-204ENST00000559834 BCL2L14Q9BZR8 327 aa7.85□□□□□ -1.15
HDDC3-204ENST00000559834 KCNN2Q9H2S1 579 aa7.85□□□□□ -1.15
HDDC3-204ENST00000559834 DECR2Q9NUI1 292 aa7.85□□□□□ -1.15
HDDC3-204ENST00000559834 SLC25A37Q9NYZ2 338 aa7.85□□□□□ -1.15
HDDC3-204ENST00000559834 MYEF2Q9P2K5 600 aaKnown RBP7.85□□□□□ -1.15
HDDC3-204ENST00000559834 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.85□□□□□ -1.15
HDDC3-204ENST00000559834 ANGPT4Q9Y264 503 aa7.85□□□□□ -1.15
HDDC3-204ENST00000559834 USH1CQ9Y6N9 552 aa7.85□□□□□ -1.15
HDDC3-204ENST00000559834 V9GYY5 206 aaPredicted RBP7.85□□□□□ -1.15
HDDC3-204ENST00000559834 IGLV3-9A0A075B6K5 115 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 A0A0G2JMP0 313 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 A0A0X1KG70 313 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 J3QLI3 93 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 DYNC1I1O14576 645 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 WNT9BO14905 357 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 POLR3GO15318 223 aaPredicted RBP7.84□□□□□ -1.15
HDDC3-204ENST00000559834 RNF13O43567 381 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 CDC14BO60729 498 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 RP2O75695 350 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 NCR1O76036 304 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 MFN2O95140 757 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 MPZL1O95297 269 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 TGDSO95455 350 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 CH25HO95992 272 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 PATE4P0C8F1 98 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 FAM157BP0CG42 384 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 ZNF250P15622 560 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 HOXB9P17482 250 aaPredicted RBP7.84□□□□□ -1.15
HDDC3-204ENST00000559834 EPHA1P21709 976 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 DRD4P21917 467 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 GATA3P23771 443 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 AQP1P29972 269 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 MAGEB1P43366 347 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 ZNF84P51523 738 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 UCP2P55851 309 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 MVKQ03426 396 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 TBC1D28Q2M2D7 210 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 HFEQ30201 348 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 ALKBH6Q3KRA9 238 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 NRN1LQ496H8 165 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 LRFN4Q6PJG9 635 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 UNQ6126/PRO20091Q6UXV3 157 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 LINC00114Q6XXX2 140 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 THSD4Q6ZMP0 1018 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 WDR88Q6ZMY6 472 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 SLC16A14Q7RTX9 510 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 COMTD1Q86VU5 262 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 ZNF584Q8IVC4 421 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 OR4M2Q8NGB6 313 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 NANPQ8TBE9 248 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 RAB1CQ92928 201 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 ZBTB9Q96C00 473 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 SPDL1Q96EA4 605 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 SH3GL3Q99963 347 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 SUCNR1Q9BXA5 334 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 ZNF665Q9H7R5 613 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 TCF7L2Q9NQB0 619 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 NANSQ9NR45 359 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 TMEM38BQ9NVV0 291 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 TAS2R5Q9NYW4 299 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 CCDC167Q9P0B6 97 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 VAPAQ9P0L0 249 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 SLAMF8Q9P0V8 285 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.84□□□□□ -1.15
HDDC3-204ENST00000559834 RAB21Q9UL25 225 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 CUBNO60494 3623 aa7.84□□□□□ -1.15
HDDC3-204ENST00000559834 IGHV1-69-2A0A0G2JMI3 117 aa7.83□□□□□ -1.16
HDDC3-204ENST00000559834 CLDN25C9JDP6 229 aa7.83□□□□□ -1.16
HDDC3-204ENST00000559834 LRRN3E7EW58 273 aa7.83□□□□□ -1.16
HDDC3-204ENST00000559834 M0QX08 132 aa7.83□□□□□ -1.16
HDDC3-204ENST00000559834 PLPP2O43688 288 aa7.83□□□□□ -1.16
HDDC3-204ENST00000559834 CHP2O43745 196 aa7.83□□□□□ -1.16
HDDC3-204ENST00000559834 TPST2O60704 377 aa7.83□□□□□ -1.16
HDDC3-204ENST00000559834 RGS9O75916 674 aaPredicted RBP7.83□□□□□ -1.16
HDDC3-204ENST00000559834 SNAP29O95721 258 aa7.83□□□□□ -1.16
HDDC3-204ENST00000559834 CLPTM1O96005 669 aa7.83□□□□□ -1.16
HDDC3-204ENST00000559834 IGHG1P01857 330 aa7.83□□□□□ -1.16
HDDC3-204ENST00000559834 QDPRP09417 244 aa7.83□□□□□ -1.16
HDDC3-204ENST00000559834 EGR1P18146 543 aa7.83□□□□□ -1.16
HDDC3-204ENST00000559834 FPR2P25090 351 aa7.83□□□□□ -1.16
HDDC3-204ENST00000559834 APLNRP35414 380 aa7.83□□□□□ -1.16
HDDC3-204ENST00000559834 CLRN1P58418 232 aa7.83□□□□□ -1.16
HDDC3-204ENST00000559834 MAGOHP61326 146 aaKnown RBP7.83□□□□□ -1.16
HDDC3-204ENST00000559834 ZNF74Q16587 644 aa7.83□□□□□ -1.16
HDDC3-204ENST00000559834 PAGE3Q5JUK9 113 aa7.83□□□□□ -1.16
HDDC3-204ENST00000559834 FAM209AQ5JX71 171 aa7.83□□□□□ -1.16
HDDC3-204ENST00000559834 HDDC2Q7Z4H3 204 aa7.83□□□□□ -1.16
HDDC3-204ENST00000559834 RETREG3Q86VR2 466 aa7.83□□□□□ -1.16
HDDC3-204ENST00000559834 FUNDC1Q8IVP5 155 aa7.83□□□□□ -1.16
HDDC3-204ENST00000559834 MSRB3Q8IXL7 192 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms