RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 TRAV8-7A0A075B6U6 113 aa9.57□□□□□ -0.88
CUX1-217ENST00000558836 OR6C76A6NM76 312 aa9.57□□□□□ -0.88
CUX1-217ENST00000558836 PLPP3O14495 311 aa9.57□□□□□ -0.88
CUX1-217ENST00000558836 SLC43A1O75387 559 aa9.57□□□□□ -0.88
CUX1-217ENST00000558836 ABHD16AO95870 558 aa9.57□□□□□ -0.88
CUX1-217ENST00000558836 FBXO45P0C2W1 286 aa9.57□□□□□ -0.88
CUX1-217ENST00000558836 RPL27P61353 136 aaKnown RBP9.57□□□□□ -0.88
CUX1-217ENST00000558836 RPS15P62841 145 aaKnown RBP9.57□□□□□ -0.88
CUX1-217ENST00000558836 FOXF1Q12946 379 aa9.57□□□□□ -0.88
CUX1-217ENST00000558836 ALKBH1Q13686 389 aaKnown RBP9.57□□□□□ -0.88
CUX1-217ENST00000558836 SGCBQ16585 318 aa9.57□□□□□ -0.88
CUX1-217ENST00000558836 PRAMEF20Q5VT98 475 aa9.57□□□□□ -0.88
CUX1-217ENST00000558836 MZT2BQ6NZ67 158 aa9.57□□□□□ -0.88
CUX1-217ENST00000558836 OVCH1Q7RTY7 1134 aa9.57□□□□□ -0.88
CUX1-217ENST00000558836 PRSS35Q8N3Z0 413 aa9.57□□□□□ -0.88
CUX1-217ENST00000558836 ZNF676Q8N7Q3 588 aa9.57□□□□□ -0.88
CUX1-217ENST00000558836 TRIM63Q969Q1 353 aa9.57□□□□□ -0.88
CUX1-217ENST00000558836 KCTD12Q96CX2 325 aaKnown RBP9.57□□□□□ -0.88
CUX1-217ENST00000558836 UBL7Q96S82 380 aaPredicted RBP9.57□□□□□ -0.88
CUX1-217ENST00000558836 LIN7BQ9HAP6 207 aa9.57□□□□□ -0.88
CUX1-217ENST00000558836 ELOVL3Q9HB03 270 aa9.57□□□□□ -0.88
CUX1-217ENST00000558836 MRPL22Q9NWU5 206 aaKnown RBP9.57□□□□□ -0.88
CUX1-217ENST00000558836 IGLV3-12A0A075B6K2 115 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 SMLR1H3BR10 107 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 EFNA2O43921 213 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 HLA-DQB1P01920 261 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 TACSTD2P09758 323 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 FAM157BP0CG42 384 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 IFNGR1P15260 489 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 ADRA2CP18825 462 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 RBMS1P29558 406 aaKnown RBP9.56□□□□□ -0.88
CUX1-217ENST00000558836 ADAM8P78325 824 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 PLA2G7Q13093 441 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 SF3A2Q15428 464 aaKnown RBP9.56□□□□□ -0.88
CUX1-217ENST00000558836 HYAL4Q2M3T9 481 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 SMUG1Q53HV7 270 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 YOD1Q5VVQ6 348 aaPredicted RBP9.56□□□□□ -0.88
CUX1-217ENST00000558836 OR7E24Q6IFN5 339 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 CPEB2Q7Z5Q1 589 aaKnown RBP9.56□□□□□ -0.88
CUX1-217ENST00000558836 LINC00346Q8IVM7 164 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 CMTM4Q8IZR5 234 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 TEX19Q8NA77 164 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 NXPE2Q96DL1 559 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 SEMA4CQ9C0C4 833 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 TP63Q9H3D4 680 aaPredicted RBP9.56□□□□□ -0.88
CUX1-217ENST00000558836 COA3Q9Y2R0 106 aaPredicted RBP9.56□□□□□ -0.88
CUX1-217ENST00000558836 IGKV1D-43A0A0B4J1Z2 117 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 GATBO75879 557 aaKnown RBP9.56□□□□□ -0.88
CUX1-217ENST00000558836 PNPP00491 289 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 FCER2P06734 321 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 SLC26A5P58743 744 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 EMC4Q5J8M3 183 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 GPR139Q6DWJ6 353 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 CORO6Q6QEF8 472 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 SLC7A5P1Q8MH63 180 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 OR2G2Q8NGZ5 317 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 SLC7A6Q92536 515 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 TMEM106AQ96A25 262 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 KLHL15Q96M94 604 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 BEX1Q9HBH7 125 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 TCF7L1Q9HCS4 588 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 PLSCR3Q9NRY6 295 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 LAMA5O15230 3695 aa9.56□□□□□ -0.88
CUX1-217ENST00000558836 CPAMD8Q8IZJ3 1885 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 TRABD2BA6NFA1 517 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 A6NL46 340 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 IFITM5A6NNB3 132 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 MS4A18H0YCH9 400 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 TOX3O15405 576 aaPredicted RBP9.55□□□□□ -0.88
CUX1-217ENST00000558836 DXOO77932 396 aaKnown RBP9.55□□□□□ -0.88
CUX1-217ENST00000558836 IGF2P01344 180 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 ANKRD34CP0C6C1 535 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 CCR6P51684 374 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 POU3F1Q03052 451 aaPredicted RBP9.55□□□□□ -0.88
CUX1-217ENST00000558836 C17orf67Q0P5P2 114 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 BTBD16Q32M84 506 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 MS4A18Q3C1V0 323 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 SLC36A2Q495M3 483 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 ZFP69Q49AA0 526 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 YIF1BQ5BJH7 314 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 ZNF385CQ66K41 422 aaPredicted RBP9.55□□□□□ -0.88
CUX1-217ENST00000558836 UNQ9370/PRO34162Q6UXP9 181 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 STAC2Q6ZMT1 411 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 UBALD2Q8IYN6 164 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 OTOSQ8NHW6 89 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 ZNF486Q96H40 463 aaPredicted RBP9.55□□□□□ -0.88
CUX1-217ENST00000558836 NECAB3Q96P71 396 aaPredicted RBP9.55□□□□□ -0.88
CUX1-217ENST00000558836 TXNIPQ9H3M7 391 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 KCNK15Q9H427 330 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 C12orf10Q9HB07 376 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 MYOTQ9UBF9 498 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 FBXL2Q9UKC9 423 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 CFAP47Q6ZTR5 3102 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 SLC22A23A1A5C7 686 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 HMX3A6NHT5 357 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 G3V3Y1 287 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 GPRIN2O60269 458 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 TMIGD3P0DMS9 266 aaPredicted RBP9.55□□□□□ -0.88
CUX1-217ENST00000558836 HOXD12P35452 270 aa9.55□□□□□ -0.88
CUX1-217ENST00000558836 HSF2Q03933 536 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms