RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	FABP1	P07148	127 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	ADRA2A	P08913	450 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZDHHC11B	P0C7U3	371 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	TACR3	P29371	465 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	AGFG1	P52594	562 aa	Known RBP	4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	CYCS	P99999	105 aa	Known RBP	4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZNF85	Q03923	595 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	MFGE8	Q08431	387 aa	Predicted RBP	4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	C2orf76	Q3KRA6	126 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	ABHD17C	Q6PCB6	329 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	ADAMTSL4	Q6UY14	1074 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	GKN2	Q86XP6	184 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	FAM213B	Q8TBF2	198 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	ASB17	Q8WXJ9	295 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	TMEM106A	Q96A25	262 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005		Q96M85	177 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR5B12	Q96R08	314 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	NPAS1	Q99742	590 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	MARVELD1	Q9BSK0	173 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	URM1	Q9BTM9	101 aa	Known RBP	4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	SGPP1	Q9BX95	441 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	C12orf10	Q9HB07	376 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	CMC2	Q9NRP2	79 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	CYSLTR2	Q9NS75	346 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	PRR13	Q9NZ81	148 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	FBXL4	Q9UKA2	621 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	SLC7A11	Q9UPY5	501 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	VDAC3	Q9Y277	283 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZSWIM8	A7E2V4	1837 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	TRBV5-3	A0A0A0MS03	114 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	SERINC4	A6NH21	518 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	EFCAB7	A8K855	629 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	TSTD3	H0UI37	97 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	SEC14L5	O43304	696 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	UTS2	O95399	124 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	HOXB3	P14651	431 aa	Predicted RBP	4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	CXCL2	P19875	107 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	DAP3	P51398	398 aa	Known RBP	4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	UBE2K	P61086	200 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	HTRA4	P83105	476 aa	Predicted RBP	4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	BAMBI	Q13145	260 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	C14orf28	Q4W4Y0	310 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	SLC35D3	Q5M8T2	416 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	EEF1A1P5	Q5VTE0	462 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	TMEM225	Q6GV28	225 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZNF704	Q6ZNC4	412 aa	Predicted RBP	4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	DPY19L4	Q7Z388	723 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	MUC20	Q8N307	709 aa	Predicted RBP	4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	BCORP1	Q8N888	145 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	BVES	Q8NE79	360 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	OR4S1	Q8NGB4	309 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	SMIM19	Q96E16	107 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZC3HAV1L	Q96H79	300 aa	Known RBP	4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	AKR1E2	Q96JD6	320 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	WWTR1	Q9GZV5	400 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	EVA1A	Q9H8M9	152 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	FN3KRP	Q9HA64	309 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	SMCO4	Q9NRQ5	59 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZNF629	Q9UEG4	869 aa	Predicted RBP	4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	URGCP-MRPS24	S4R325	110 aa		4.57	□□□□□ -1.68
SYNE2-223	ENST00000557005	TRAV1-2	A0A0B4J238	106 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	TMEM269	A0A1B0GVZ9	245 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	MFSD2B	A6NFX1	497 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	IFITM5	A6NNB3	132 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZNF705F	A8MVS1	300 aa	Predicted RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	STK17B	O94768	372 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	SERPINA5	P05154	406 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZNF705D	P0CH99	300 aa	Predicted RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZNF705B	P0CI00	300 aa	Predicted RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	C5AR1	P21730	350 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	CSF2RB	P32927	897 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	RAB13	P51153	203 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	RAB38	P57729	211 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	SNRPE	P62304	92 aa	Known RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	LSM11	P83369	360 aa	Known RBP eCLIP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	TPBG	Q13641	420 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	MRPL58	Q14197	206 aa	Known RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	SLC36A2	Q495M3	483 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	SLC22A6	Q4U2R8	563 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZNF626	Q68DY1	528 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	SLC39A5	Q6ZMH5	540 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	RNF165	Q6ZSG1	346 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	CPEB2	Q7Z5Q1	589 aa	Known RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	BATF2	Q8N1L9	274 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	VN1R2	Q8NFZ6	395 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	YIPF5	Q969M3	257 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	ZNF587	Q96SQ5	575 aa	Predicted RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	C1orf123	Q9NWV4	160 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	SLCO1C1	Q9NYB5	712 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	APOBEC3B	Q9UH17	382 aa	Known RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	ELF5	Q9UKW6	265 aa	Predicted RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	CCDC85C	A6NKD9	419 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005		H0YGG7	62 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	NPC1	O15118	1278 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	RAD51D	O75771	328 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	WDPCP	O95876	746 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	FCGR2A	P12318	317 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	IFNGR1	P15260	489 aa		4.56	□□□□□ -1.68
SYNE2-223	ENST00000557005	MGMT	P16455	207 aa		4.56	□□□□□ -1.68

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