RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 ATP5IP56385 69 aaPredicted RBP1.76□□□□□ -2.13
SCFD1-218ENST00000556256 RPS21P63220 83 aaKnown RBP1.76□□□□□ -2.13
SCFD1-218ENST00000556256 PAX5Q02548 391 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 AQP6Q13520 282 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 IDI1Q13907 227 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 TMEM183BQ1AE95 376 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 COA6Q5JTJ3 125 aaKnown RBP1.76□□□□□ -2.13
SCFD1-218ENST00000556256 TMEM107Q6UX40 140 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 LINC00173Q6ZV60 143 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 H2AFVQ71UI9 128 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 TAS2R42Q7RTR8 314 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 ASCL5Q7RTU5 278 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 PEX26Q7Z412 305 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 CDH26Q8IXH8 852 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 C12orf56Q8IXR9 622 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 TMEM183AQ8IXX5 376 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 ZNF786Q8N393 782 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 STPG2Q8N412 459 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 DUSP18Q8NEJ0 188 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 OR2G2Q8NGZ5 317 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 AKR7LQ8NHP1 331 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 KCNG3Q8TAE7 436 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 SLC22A8Q8TCC7 542 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 ACTRT1Q8TDG2 376 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 SH3GL3Q99963 347 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 ECSITQ9BQ95 431 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 RACGAP1Q9H0H5 632 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 NEUROG2Q9H2A3 272 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 NTN4Q9HB63 628 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 SLCO1B3Q9NPD5 702 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 INPP5EQ9NRR6 644 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 SLC2A8Q9NY64 477 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 STARD10Q9Y365 291 aa1.76□□□□□ -2.13
SCFD1-218ENST00000556256 MTCL1Q9Y4B5 1905 aaKnown RBP1.76□□□□□ -2.13
SCFD1-218ENST00000556256 CARMIL3Q8ND23 1372 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 ASTN1O14525 1302 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 TRAV39A0A0B4J263 110 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 H3BNH8 94 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 MRPS12O15235 138 aaKnown RBP1.75□□□□□ -2.13
SCFD1-218ENST00000556256 SNAI2O43623 268 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 CD5LO43866 347 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 EIF3GO75821 320 aaKnown RBP eCLIP1.75□□□□□ -2.13
SCFD1-218ENST00000556256 ERLIN2O94905 339 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 FOLR1P15328 257 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 SLC2A5P22732 501 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 HOXA9P31269 272 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 PPOXP50336 477 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 ZNF136P52737 540 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 PRMT2P55345 433 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 MRPS22P82650 360 aaKnown RBP1.75□□□□□ -2.13
SCFD1-218ENST00000556256 HMGCS1Q01581 520 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 ENPEPQ07075 957 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 TTLL9Q3SXZ7 439 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 TSPO2Q5TGU0 170 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 RNASEKQ6P5S7 137 aaKnown RBP1.75□□□□□ -2.13
SCFD1-218ENST00000556256 DUX4L9Q6RFH8 374 aaPredicted RBP1.75□□□□□ -2.13
SCFD1-218ENST00000556256 SASS6Q6UVJ0 657 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 C15orf56Q8N910 161 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 HSD17B11Q8NBQ5 300 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 B3GNT7Q8NFL0 401 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 OR1S2Q8NGQ3 325 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 RAB3IL1Q8TBN0 382 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 ZNF596Q8TC21 504 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 GPR151Q8TDV0 419 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 RNF139Q8WU17 664 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 SDR42E1Q8WUS8 393 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 PIBF1Q8WXW3 757 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 N4BP2L2Q92802 583 aaPredicted RBP1.75□□□□□ -2.13
SCFD1-218ENST00000556256 RASD2Q96D21 266 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 MED8Q96G25 268 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 TAAR1Q96RJ0 339 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 HDHD3Q9BSH5 251 aaPredicted RBP1.75□□□□□ -2.13
SCFD1-218ENST00000556256 TCHPQ9BT92 498 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 OSBPL10Q9BXB5 764 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 GABARAPL3Q9BY60 117 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 SLC17A9Q9BYT1 436 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 MRPL37Q9BZE1 423 aaKnown RBP1.75□□□□□ -2.13
SCFD1-218ENST00000556256 ILKAPQ9H0C8 392 aaPredicted RBP1.75□□□□□ -2.13
SCFD1-218ENST00000556256 TM9SF3Q9HD45 589 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 PSMC3IPQ9P2W1 217 aaPredicted RBP1.75□□□□□ -2.13
SCFD1-218ENST00000556256 DEC1Q9P2X7 70 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 PCYOX1Q9UHG3 505 aa1.75□□□□□ -2.13
SCFD1-218ENST00000556256 NFASCO94856 1347 aa1.74□□□□□ -2.13
SCFD1-218ENST00000556256 IGLV11-55A0A075B6I3 123 aa1.74□□□□□ -2.13
SCFD1-218ENST00000556256 A0A0B4J2A0 478 aa1.74□□□□□ -2.13
SCFD1-218ENST00000556256 SPECC1L-ADORA2AF8WAN1 911 aa1.74□□□□□ -2.13
SCFD1-218ENST00000556256 H0YHG0 523 aa1.74□□□□□ -2.13
SCFD1-218ENST00000556256 AP3B1O00203 1094 aa1.74□□□□□ -2.13
SCFD1-218ENST00000556256 XKRYO14609 159 aa1.74□□□□□ -2.13
SCFD1-218ENST00000556256 ICOSLGO75144 302 aa1.74□□□□□ -2.13
SCFD1-218ENST00000556256 UTS2O95399 124 aa1.74□□□□□ -2.13
SCFD1-218ENST00000556256 SLC25A27O95847 323 aa1.74□□□□□ -2.13
SCFD1-218ENST00000556256 TSPAN13O95857 204 aa1.74□□□□□ -2.13
SCFD1-218ENST00000556256 CNR1P21554 472 aa1.74□□□□□ -2.13
SCFD1-218ENST00000556256 IFNA8P32881 189 aa1.74□□□□□ -2.13
SCFD1-218ENST00000556256 SERPINB5P36952 375 aa1.74□□□□□ -2.13
SCFD1-218ENST00000556256 AQP2P41181 271 aa1.74□□□□□ -2.13
SCFD1-218ENST00000556256 NSG1P42857 185 aa1.74□□□□□ -2.13
SCFD1-218ENST00000556256 RORCP51449 518 aa1.74□□□□□ -2.13
SCFD1-218ENST00000556256 SSR4P51571 173 aa1.74□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms