RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 ZNHIT3Q15649 155 aaPredicted RBP3.04□□□□□ -1.92
LIMA1-206ENST00000550611 EFNB3Q15768 340 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 DUSP5Q16690 384 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 VPS26BQ4G0F5 336 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 IQCCQ4KMZ1 466 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 UNC50Q53HI1 259 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 SPIN4Q56A73 249 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 VAX1Q5SQQ9 334 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.04□□□□□ -1.92
LIMA1-206ENST00000550611 OR7E24Q6IFN5 339 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 ZCCHC12Q6PEW1 402 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 UGT2A3Q6UWM9 527 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 TMPPEQ6ZT21 453 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 CTAGE3PQ8IX95 158 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 KLHL7Q8IXQ5 586 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 ZNF786Q8N393 782 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 C17orf78Q8N4C9 275 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 IQCF1Q8N6M8 205 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 CDRT4Q8N9R6 151 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 GATSQ8NAP1 163 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 FAM76AQ8TAV0 307 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 GPR151Q8TDV0 419 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 WIPF2Q8TF74 440 aaPredicted RBP3.04□□□□□ -1.92
LIMA1-206ENST00000550611 NUDCD2Q8WVJ2 157 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 SLC25A28Q96A46 364 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 FBXO17Q96EF6 278 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 C16orf58Q96GQ5 468 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 SH3YL1Q96HL8 342 aaPredicted RBP3.04□□□□□ -1.92
LIMA1-206ENST00000550611 ZNF382Q96SR6 550 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 DOK1Q99704 481 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 ERP44Q9BS26 406 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 C1QTNF6Q9BXI9 259 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 C1QTNF5Q9BXJ0 243 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 RACGAP1Q9H0H5 632 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 ANKZF1Q9H8Y5 726 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 FKRPQ9H9S5 495 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 MYNNQ9NPC7 610 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 RRAGDQ9NQL2 400 aaPredicted RBP3.04□□□□□ -1.92
LIMA1-206ENST00000550611 GIMAP4Q9NUV9 329 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 DDX18Q9NVP1 670 aaKnown RBP3.04□□□□□ -1.92
LIMA1-206ENST00000550611 CHCHD3Q9NX63 227 aaKnown RBP3.04□□□□□ -1.92
LIMA1-206ENST00000550611 TAS2R16Q9NYV7 291 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 RNF14Q9UBS8 474 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 AASSQ9UDR5 926 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 POU2F3Q9UKI9 436 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 MOKQ9UQ07 419 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 CCL27Q9Y4X3 112 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 LYSTQ99698 3801 aa3.04□□□□□ -1.92
LIMA1-206ENST00000550611 DNAH3Q8TD57 4116 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 NPIPA5A0A0B4J1W7 369 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 IGHV1-18A0A0C4DH31 117 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 GNG14A0A1W2PPG7 69 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 A0A1W2PPH5 198 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 CIB4A0PJX0 185 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 CCT8L1PA6NM43 557 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 A8MT66 165 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 B4DSR2 109 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 NPIPA7E9PJI5 369 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 ATP6V1G2-DDX39BF2Z307 99 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 CCDC188H7C350 402 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 RRHO14718 337 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 EIF4E2O60573 245 aaKnown RBP3.03□□□□□ -1.92
LIMA1-206ENST00000550611 SMIM24O75264 130 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 RAD51DO75771 328 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 SLU7O95391 586 aaKnown RBP3.03□□□□□ -1.92
LIMA1-206ENST00000550611 HSPA4LO95757 839 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 IGHV3-9P01782 118 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 KRT6AP02538 564 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 KRT6BP04259 564 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 NPIPA8P0DM63 369 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 DAOP14920 347 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 HOXB9P17482 250 aaPredicted RBP3.03□□□□□ -1.92
LIMA1-206ENST00000550611 TCP1P17987 556 aaKnown RBP3.03□□□□□ -1.92
LIMA1-206ENST00000550611 ARRB2P32121 409 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 STX2P32856 288 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 ARL1P40616 181 aaPredicted RBP3.03□□□□□ -1.92
LIMA1-206ENST00000550611 RFX3P48380 749 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 KRT6CP48668 564 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 PPOXP50336 477 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 ATP12AP54707 1039 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 LMO4P61968 165 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 MRPS25P82663 173 aaKnown RBP3.03□□□□□ -1.92
LIMA1-206ENST00000550611 H3F3AP84243 136 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 POU3F1Q03052 451 aaPredicted RBP3.03□□□□□ -1.92
LIMA1-206ENST00000550611 ACSM2AQ08AH3 577 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 ZNF763Q0D2J5 394 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 SELENBP1Q13228 472 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 RASA2Q15283 850 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 TRIP10Q15642 601 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 ADIPOQQ15848 244 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 TSTQ16762 297 aaKnown RBP3.03□□□□□ -1.92
LIMA1-206ENST00000550611 ZNF678Q5SXM1 525 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 CCNJQ5T5M9 372 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 ACSM2BQ68CK6 577 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 KLC3Q6P597 504 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 LRIG3Q6UXM1 1119 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 C1orf122Q6ZSJ8 110 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 IKBIPQ70UQ0 350 aa3.03□□□□□ -1.92
LIMA1-206ENST00000550611 ZNF771Q7L3S4 317 aaPredicted RBP3.03□□□□□ -1.92
LIMA1-206ENST00000550611 R3HCC1LQ7Z5L2 792 aaKnown RBP3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms