RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 ELP5Q8TE02 316 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 MS4A3Q96HJ5 214 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 TSSK2Q96PF2 358 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 CMC2Q9NRP2 79 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 CGGBP1Q9UFW8 167 aaPredicted RBP13.07□□□□□ -0.32
LIMS1-215ENST00000544547 SEC16AO15027 2179 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 CTNSO60931 367 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 CLDN6P56747 220 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 RNF212Q495C1 297 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 EID2Q8N6I1 236 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 THAP3Q8WTV1 239 aaPredicted RBP13.07□□□□□ -0.32
LIMS1-215ENST00000544547 BADQ92934 168 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 TINAGL1Q9GZM7 467 aaPredicted RBP13.07□□□□□ -0.32
LIMS1-215ENST00000544547 ENKD1Q9H0I2 346 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 HIF3AQ9Y2N7 669 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 CCNOP22674 350 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 RAB28P51157 221 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 SHC2P98077 582 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 GUCA2BQ16661 112 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 CHRFAM7AQ494W8 412 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 ALG10Q5BKT4 473 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 AADACL4Q5VUY2 407 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 WFDC6Q9BQY6 131 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 ELOVL3Q9HB03 270 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 OPN4Q9UHM6 478 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 OR5K4A6NMS3 321 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 IDSB3KWA1 339 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 H7C417 338 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 DCTN6O00399 190 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 SLC34A2O95436 690 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 RNH1P13489 461 aaKnown RBP13.06□□□□□ -0.32
LIMS1-215ENST00000544547 TRHRP34981 398 aaPredicted RBP13.06□□□□□ -0.32
LIMS1-215ENST00000544547 BDH1Q02338 343 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 ELOCQ15369 112 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 GLYATL3Q5SZD4 288 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 RGS7BPQ6MZT1 257 aaPredicted RBP13.06□□□□□ -0.32
LIMS1-215ENST00000544547 TRAPPC6BQ86SZ2 158 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 OR6S1Q8NH40 331 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 GOT1L1Q8NHS2 421 aaPredicted RBP13.06□□□□□ -0.32
LIMS1-215ENST00000544547 CPEB1Q9BZB8 566 aaKnown RBP13.06□□□□□ -0.32
LIMS1-215ENST00000544547 PELI2Q9HAT8 420 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 C19orf25Q9UFG5 118 aaPredicted RBP13.06□□□□□ -0.32
LIMS1-215ENST00000544547 TMEM218A2RU14 115 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 RFPL4AA6NLU0 287 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 RFPL4AL1F8VTS6 287 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 ZNF44P15621 663 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 HIST1H1CP16403 213 aaKnown RBP13.06□□□□□ -0.32
LIMS1-215ENST00000544547 CST6Q15828 149 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 FAM26DQ5JW98 314 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 ZNF626Q68DY1 528 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 TMEM225Q6GV28 225 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 GABRG1Q8N1C3 465 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 SUMF2Q8NBJ7 301 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 RAB3CQ96E17 227 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 KLHL15Q96M94 604 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 SFXN1Q9H9B4 322 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 SPACA1Q9HBV2 294 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 PDE7BQ9NP56 450 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 PRSS16Q9NQE7 514 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 FAM221BA6H8Z2 402 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 P2RX6O15547 441 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 SEMG1P04279 462 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 PTAFRP25105 342 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 CTGFP29279 349 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 GLP1RP43220 463 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 ALDH3B1P43353 468 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 DEFB103AP81534 67 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 OR1J2Q8NGS2 313 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 OR5H2Q8NGV7 314 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 TOMM40LQ969M1 308 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 ISOC2Q96AB3 205 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 AKR1E2Q96JD6 320 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 ZNF587Q96SQ5 575 aaPredicted RBP13.06□□□□□ -0.32
LIMS1-215ENST00000544547 OR52A5Q9H2C5 316 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 IL20Q9NYY1 176 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 HS3ST2Q9Y278 367 aa13.06□□□□□ -0.32
LIMS1-215ENST00000544547 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.05□□□□□ -0.32
LIMS1-215ENST00000544547 TMEM235A6NFC5 223 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 K7ESM1 405 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 YKT6O15498 198 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 PTP4A3O75365 173 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 ZNF888P0CJ79 500 aaPredicted RBP13.05□□□□□ -0.32
LIMS1-215ENST00000544547 PI3P19957 117 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 AFF3P51826 1226 aaKnown RBP13.05□□□□□ -0.32
LIMS1-215ENST00000544547 PLEKHN1Q494U1 663 aaPredicted RBP13.05□□□□□ -0.32
LIMS1-215ENST00000544547 COX15Q7KZN9 410 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 OVCH2Q7RTZ1 564 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 TSEN54Q7Z6J9 526 aaKnown RBP13.05□□□□□ -0.32
LIMS1-215ENST00000544547 LSRQ86X29 649 aaPredicted RBP13.05□□□□□ -0.32
LIMS1-215ENST00000544547 CSNK1A1LQ8N752 337 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 TRMT2BQ96GJ1 504 aaKnown RBP13.05□□□□□ -0.32
LIMS1-215ENST00000544547 MYADMQ96S97 322 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 CDC6Q99741 560 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 SLC25A21Q9BQT8 299 aaPredicted RBP13.05□□□□□ -0.32
LIMS1-215ENST00000544547 CNTNAP3Q9BZ76 1288 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 A0A1B0GWA3 101 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 TCRBV21S2A2A0A5A6 115 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 AQP8O94778 261 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 NTSR1P30989 418 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 AWAT2Q6E213 333 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms