RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 C11orf40Q8WZ69 217 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 HOXB13Q92826 284 aaPredicted RBP3.99□□□□□ -1.77
LIMS1-214ENST00000542845 UPRTQ96BW1 309 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 PPCDCQ96CD2 204 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 SLC25A36Q96CQ1 311 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 CCDC126Q96EE4 140 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 FAM120BQ96EK7 910 aaKnown RBP3.99□□□□□ -1.77
LIMS1-214ENST00000542845 PBKQ96KB5 322 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 STACQ99469 402 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 SDF2Q99470 211 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 PRPF18Q99633 342 aaKnown RBP3.99□□□□□ -1.77
LIMS1-214ENST00000542845 SF3B5Q9BWJ5 86 aaKnown RBP3.99□□□□□ -1.77
LIMS1-214ENST00000542845 ACTRT3Q9BYD9 372 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 EGLN1Q9GZT9 426 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 MMP28Q9H239 520 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 RNF121Q9H920 327 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 TNFRSF12AQ9NP84 129 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 DUSP22Q9NRW4 184 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 B3GNT2Q9NY97 397 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 SLCO1C1Q9NYB5 712 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 NKIRAS2Q9NYR9 191 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 BAIAP2L1Q9UHR4 511 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 MAGEL2Q9UJ55 1249 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 KCNE5Q9UJ90 142 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 PCDHGB4Q9UN71 923 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 RCE1Q9Y256 329 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 SIGLEC9Q9Y336 463 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 NPTNQ9Y639 398 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 POMT1Q9Y6A1 747 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 U3KQK5 164 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 PLSCR5A0PG75 271 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 SLC22A23A1A5C7 686 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 LIPT2A6NK58 231 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 AQP7P3A6NL99 342 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 STX16-NPEPL1H3BU86 382 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 AP3D1O14617 1153 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 STX16O14662 325 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 CFLARO15519 480 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 BCAS1O75363 584 aaPredicted RBP3.98□□□□□ -1.77
LIMS1-214ENST00000542845 UGT2B17O75795 530 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 IGHV1-46P01743 117 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 IGHV2-70P01814 119 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 RBP1P09455 135 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 VSIG10L2P0DP72 767 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 THRBP10828 461 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 B4GALT1P15291 398 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 ZNF43P17038 809 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 CCNOP22674 350 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 TNFSF4P23510 183 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 CXCR1P25024 350 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 CCT3P49368 545 aaKnown RBP3.98□□□□□ -1.77
LIMS1-214ENST00000542845 ZNF75DP51815 510 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 POLR2HP52434 150 aaKnown RBP3.98□□□□□ -1.77
LIMS1-214ENST00000542845 MAP2K6P52564 334 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 GUCY2DQ02846 1103 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 CAMK2DQ13557 499 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 C1DQ13901 141 aaKnown RBP3.98□□□□□ -1.77
LIMS1-214ENST00000542845 MAPK14Q16539 360 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 MOGQ16653 247 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 RUNDC3AQ59EK9 446 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 SPATA46Q5T0L3 261 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 TEPPQ6URK8 271 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 ZNF813Q6ZN06 617 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 GDPGP1Q6ZNW5 385 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 C1orf122Q6ZSJ8 110 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 EPHX4Q8IUS5 362 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 PDZD9Q8IXQ8 264 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 CCDC36Q8IYA8 594 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 PRR18Q8N4B5 295 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 SPICQ8N5J4 248 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 OR2C3Q8N628 320 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 TMEM86BQ8N661 226 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 ARFGAP2Q8N6H7 521 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 SPC24Q8NBT2 197 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 SCCPDHQ8NBX0 429 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 OR1J1Q8NGS3 322 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 OR5AK3PQ8NH89 298 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 DCAKDQ8WVC6 231 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 RAB40AQ8WXH6 277 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 TSSK3Q96PN8 268 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 ZNF317Q96PQ6 595 aaPredicted RBP3.98□□□□□ -1.77
LIMS1-214ENST00000542845 OR7D2Q96RA2 312 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 B9D2Q9BPU9 175 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 SSBP3Q9BWW4 388 aaPredicted RBP3.98□□□□□ -1.77
LIMS1-214ENST00000542845 LINC00470Q9BZP3 86 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 CENPHQ9H3R5 247 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 PRDM13Q9H4Q3 707 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 C16orf95Q9H693 158 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 CNTD2Q9H8S5 307 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 CDH20Q9HBT6 801 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 TMEM165Q9HC07 324 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 PALMDQ9NP74 551 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 NIPSNAP3AQ9UFN0 247 aaPredicted RBP3.98□□□□□ -1.77
LIMS1-214ENST00000542845 IL20RAQ9UHF4 553 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 SLC7A8Q9UHI5 535 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 OSGIN1Q9UJX0 560 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 TMCO1Q9UM00 188 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 GTF2A1LQ9UNN4 478 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 POFUT2Q9Y2G5 429 aa3.98□□□□□ -1.77
LIMS1-214ENST00000542845 SNX24Q9Y343 169 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms