RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 FGD3Q5JSP0 725 aa13.08□□□□□ -0.31
UBE3B-212ENST00000540230 RNF113BQ8IZP6 322 aaKnown RBP13.08□□□□□ -0.31
UBE3B-212ENST00000540230 DEPDC4Q8N2C3 294 aa13.08□□□□□ -0.31
UBE3B-212ENST00000540230 MUC15Q8N387 334 aa13.08□□□□□ -0.31
UBE3B-212ENST00000540230 CLDN22Q8N7P3 220 aa13.08□□□□□ -0.31
UBE3B-212ENST00000540230 FAM46AQ96IP4 442 aaKnown RBP13.08□□□□□ -0.31
UBE3B-212ENST00000540230 DHRS1Q96LJ7 313 aa13.08□□□□□ -0.31
UBE3B-212ENST00000540230 FUZQ9BT04 418 aa13.08□□□□□ -0.31
UBE3B-212ENST00000540230 KATNB1Q9BVA0 655 aa13.08□□□□□ -0.31
UBE3B-212ENST00000540230 ANKRD19PQ9H560 264 aa13.08□□□□□ -0.31
UBE3B-212ENST00000540230 NDE1Q9NXR1 346 aa13.08□□□□□ -0.31
UBE3B-212ENST00000540230 GDF2Q9UK05 429 aaPredicted RBP13.08□□□□□ -0.31
UBE3B-212ENST00000540230 TMCC2O75069 709 aa13.08□□□□□ -0.32
UBE3B-212ENST00000540230 SLC2A10O95528 541 aa13.08□□□□□ -0.32
UBE3B-212ENST00000540230 LIMS1P48059 325 aa13.08□□□□□ -0.32
UBE3B-212ENST00000540230 FABP6P51161 128 aa13.08□□□□□ -0.32
UBE3B-212ENST00000540230 DAP3P51398 398 aaKnown RBP13.08□□□□□ -0.32
UBE3B-212ENST00000540230 CTXN1P60606 82 aa13.08□□□□□ -0.32
UBE3B-212ENST00000540230 HGFACQ04756 655 aa13.08□□□□□ -0.32
UBE3B-212ENST00000540230 C3orf36Q3SXR2 165 aa13.08□□□□□ -0.32
UBE3B-212ENST00000540230 ARFGEF3Q5TH69 2177 aa13.08□□□□□ -0.32
UBE3B-212ENST00000540230 PRSS57Q6UWY2 283 aa13.08□□□□□ -0.32
UBE3B-212ENST00000540230 CYP2R1Q6VVX0 501 aa13.08□□□□□ -0.32
UBE3B-212ENST00000540230 TMPRSS11FQ6ZWK6 438 aa13.08□□□□□ -0.32
UBE3B-212ENST00000540230 OAFQ86UD1 273 aa13.08□□□□□ -0.32
UBE3B-212ENST00000540230 SKA3Q8IX90 412 aa13.08□□□□□ -0.32
UBE3B-212ENST00000540230 FAM169BQ8N8A8 192 aa13.08□□□□□ -0.32
UBE3B-212ENST00000540230 OR52J3Q8NH60 311 aa13.08□□□□□ -0.32
UBE3B-212ENST00000540230 NMD3Q96D46 503 aaKnown RBP13.08□□□□□ -0.32
UBE3B-212ENST00000540230 TSPAN32Q96QS1 320 aa13.08□□□□□ -0.32
UBE3B-212ENST00000540230 SMR3AQ99954 134 aa13.08□□□□□ -0.32
UBE3B-212ENST00000540230 SH3GL3Q99963 347 aa13.08□□□□□ -0.32
UBE3B-212ENST00000540230 CACNG6Q9BXT2 260 aa13.08□□□□□ -0.32
UBE3B-212ENST00000540230 TXNIPQ9H3M7 391 aa13.08□□□□□ -0.32
UBE3B-212ENST00000540230 GSX1Q9H4S2 264 aaPredicted RBP13.08□□□□□ -0.32
UBE3B-212ENST00000540230 CBLN4Q9NTU7 201 aa13.08□□□□□ -0.32
UBE3B-212ENST00000540230 FAIMQ9NVQ4 179 aa13.08□□□□□ -0.32
UBE3B-212ENST00000540230 TMEM38BQ9NVV0 291 aa13.08□□□□□ -0.32
UBE3B-212ENST00000540230 ZNF346Q9UL40 294 aaKnown RBP13.08□□□□□ -0.32
UBE3B-212ENST00000540230 FAM32AQ9Y421 112 aaKnown RBP13.08□□□□□ -0.32
UBE3B-212ENST00000540230 IGHV2OR16-5A0A0B4J2B6 119 aa13.07□□□□□ -0.32
UBE3B-212ENST00000540230 HTR3EA5X5Y0 456 aa13.07□□□□□ -0.32
UBE3B-212ENST00000540230 NPIPB13A6NJU9 1138 aa13.07□□□□□ -0.32
UBE3B-212ENST00000540230 NPIPB4C9JG80 1138 aa13.07□□□□□ -0.32
UBE3B-212ENST00000540230 PDE5AO76074 875 aa13.07□□□□□ -0.32
UBE3B-212ENST00000540230 IGHV4-39P01824 125 aa13.07□□□□□ -0.32
UBE3B-212ENST00000540230 IGHMP01871 453 aa13.07□□□□□ -0.32
UBE3B-212ENST00000540230 CRYAAP02489 173 aa13.07□□□□□ -0.32
UBE3B-212ENST00000540230 CALB2P22676 271 aa13.07□□□□□ -0.32
UBE3B-212ENST00000540230 ARR3P36575 388 aa13.07□□□□□ -0.32
UBE3B-212ENST00000540230 OMPP47874 163 aa13.07□□□□□ -0.32
UBE3B-212ENST00000540230 MNAT1P51948 309 aa13.07□□□□□ -0.32
UBE3B-212ENST00000540230 GSG1Q2KHT4 349 aa13.07□□□□□ -0.32
UBE3B-212ENST00000540230 AGAP6Q5VW22 663 aa13.07□□□□□ -0.32
UBE3B-212ENST00000540230 ZNF544Q6NX49 715 aa13.07□□□□□ -0.32
UBE3B-212ENST00000540230 FBXL14Q8N1E6 418 aa13.07□□□□□ -0.32
UBE3B-212ENST00000540230 SLC22A24Q8N4F4 322 aa13.07□□□□□ -0.32
UBE3B-212ENST00000540230 BCAS4Q8TDM0 211 aa13.07□□□□□ -0.32
UBE3B-212ENST00000540230 KCNK17Q96T54 332 aa13.07□□□□□ -0.32
UBE3B-212ENST00000540230 GPA33Q99795 319 aa13.07□□□□□ -0.32
UBE3B-212ENST00000540230 GRIP2Q9C0E4 1043 aa13.07□□□□□ -0.32
UBE3B-212ENST00000540230 ZNF14P17017 642 aaPredicted RBP13.06□□□□□ -0.32
UBE3B-212ENST00000540230 PAX7P23759 505 aa13.06□□□□□ -0.32
UBE3B-212ENST00000540230 GIPRP48546 466 aa13.06□□□□□ -0.32
UBE3B-212ENST00000540230 PTDSS1P48651 473 aaKnown RBP13.06□□□□□ -0.32
UBE3B-212ENST00000540230 SLC9A3P48764 834 aa13.06□□□□□ -0.32
UBE3B-212ENST00000540230 ZNF133P52736 654 aaPredicted RBP13.06□□□□□ -0.32
UBE3B-212ENST00000540230 FXYD6P3P58550 94 aa13.06□□□□□ -0.32
UBE3B-212ENST00000540230 RPL27P61353 136 aaKnown RBP13.06□□□□□ -0.32
UBE3B-212ENST00000540230 RAB1AP62820 205 aa13.06□□□□□ -0.32
UBE3B-212ENST00000540230 MS4A2Q01362 244 aa13.06□□□□□ -0.32
UBE3B-212ENST00000540230 SPIBQ01892 262 aa13.06□□□□□ -0.32
UBE3B-212ENST00000540230 MST1LQ2TV78 715 aa13.06□□□□□ -0.32
UBE3B-212ENST00000540230 VHLLQ6RSH7 139 aa13.06□□□□□ -0.32
UBE3B-212ENST00000540230 PIWIL3Q7Z3Z3 882 aaKnown RBP13.06□□□□□ -0.32
UBE3B-212ENST00000540230 ZNF584Q8IVC4 421 aa13.06□□□□□ -0.32
UBE3B-212ENST00000540230 CCDC36Q8IYA8 594 aa13.06□□□□□ -0.32
UBE3B-212ENST00000540230 OR4K5Q8NGD3 323 aa13.06□□□□□ -0.32
UBE3B-212ENST00000540230 ZNF519Q8TB69 540 aa13.06□□□□□ -0.32
UBE3B-212ENST00000540230 CLPTM1LQ96KA5 538 aa13.06□□□□□ -0.32
UBE3B-212ENST00000540230 KCNS3Q9BQ31 491 aa13.06□□□□□ -0.32
UBE3B-212ENST00000540230 CA10Q9NS85 328 aa13.06□□□□□ -0.32
UBE3B-212ENST00000540230 TAS2R1Q9NYW7 299 aa13.06□□□□□ -0.32
UBE3B-212ENST00000540230 ACTR3BQ9P1U1 418 aa13.06□□□□□ -0.32
UBE3B-212ENST00000540230 ADAM18Q9Y3Q7 739 aa13.06□□□□□ -0.32
UBE3B-212ENST00000540230 UGT2A1Q9Y4X1 527 aa13.06□□□□□ -0.32
UBE3B-212ENST00000540230 TCRBV5S2A0A599 114 aa13.05□□□□□ -0.32
UBE3B-212ENST00000540230 CENPBD1B2RD01 187 aa13.05□□□□□ -0.32
UBE3B-212ENST00000540230 H7C1C5 153 aa13.05□□□□□ -0.32
UBE3B-212ENST00000540230 H7C1Q1 480 aa13.05□□□□□ -0.32
UBE3B-212ENST00000540230 FABP3P05413 133 aa13.05□□□□□ -0.32
UBE3B-212ENST00000540230 APOBEC3AP31941 199 aaPredicted RBP13.05□□□□□ -0.32
UBE3B-212ENST00000540230 CDAP32320 146 aa13.05□□□□□ -0.32
UBE3B-212ENST00000540230 ACVR1BP36896 505 aa13.05□□□□□ -0.32
UBE3B-212ENST00000540230 LCN6P62502 163 aa13.05□□□□□ -0.32
UBE3B-212ENST00000540230 ERVK-25P63136 954 aa13.05□□□□□ -0.32
UBE3B-212ENST00000540230 CD47Q08722 323 aa13.05□□□□□ -0.32
UBE3B-212ENST00000540230 SPATS1Q496A3 300 aa13.05□□□□□ -0.32
UBE3B-212ENST00000540230 ZBED5Q49AG3 693 aa13.05□□□□□ -0.32
UBE3B-212ENST00000540230 C10orf128Q5T292 105 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms