RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 TAGLN3Q9UI15 199 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 RPS6KA6Q9UK32 745 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 ENPP4Q9Y6X5 453 aa12.82□□□□□ -0.36
USP28-204ENST00000537642 RTTNQ86VV8 2226 aa12.81□□□□□ -0.36
USP28-204ENST00000537642 NPIPB13A6NJU9 1138 aa12.81□□□□□ -0.36
USP28-204ENST00000537642 CENPBD1B2RD01 187 aa12.81□□□□□ -0.36
USP28-204ENST00000537642 NPIPB4C9JG80 1138 aa12.81□□□□□ -0.36
USP28-204ENST00000537642 RNF223E7ERA6 249 aa12.81□□□□□ -0.36
USP28-204ENST00000537642 DCTN3O75935 186 aa12.81□□□□□ -0.36
USP28-204ENST00000537642 OR4A8P0C604 315 aa12.81□□□□□ -0.36
USP28-204ENST00000537642 PATE4P0C8F1 98 aa12.81□□□□□ -0.36
USP28-204ENST00000537642 ZNF14P17017 642 aaPredicted RBP12.81□□□□□ -0.36
USP28-204ENST00000537642 HOXB4P17483 251 aaPredicted RBP12.81□□□□□ -0.36
USP28-204ENST00000537642 SERPINF1P36955 418 aa12.81□□□□□ -0.36
USP28-204ENST00000537642 GIPRP48546 466 aa12.81□□□□□ -0.36
USP28-204ENST00000537642 RAB1AP62820 205 aa12.81□□□□□ -0.36
USP28-204ENST00000537642 FHL1Q13642 323 aa12.81□□□□□ -0.36
USP28-204ENST00000537642 RAB35Q15286 201 aa12.81□□□□□ -0.36
USP28-204ENST00000537642 FXNQ16595 210 aa12.81□□□□□ -0.36
USP28-204ENST00000537642 ALG10Q5BKT4 473 aa12.81□□□□□ -0.36
USP28-204ENST00000537642 TBPL2Q6SJ96 375 aa12.81□□□□□ -0.36
USP28-204ENST00000537642 RNF113BQ8IZP6 322 aaKnown RBP12.81□□□□□ -0.36
USP28-204ENST00000537642 PGAM4Q8N0Y7 254 aa12.81□□□□□ -0.36
USP28-204ENST00000537642 SLC22A24Q8N4F4 322 aa12.81□□□□□ -0.36
USP28-204ENST00000537642 FAM86B1Q8N7N1 296 aa12.81□□□□□ -0.36
USP28-204ENST00000537642 LRRC75AQ8NAA5 344 aa12.81□□□□□ -0.36
USP28-204ENST00000537642 IL17RDQ8NFM7 739 aa12.81□□□□□ -0.36
USP28-204ENST00000537642 HDAC2Q92769 488 aaKnown RBP12.81□□□□□ -0.36
USP28-204ENST00000537642 TXNIPQ9H3M7 391 aa12.81□□□□□ -0.36
USP28-204ENST00000537642 NMNAT1Q9HAN9 279 aaPredicted RBP12.81□□□□□ -0.36
USP28-204ENST00000537642 NDUFAF4Q9P032 175 aa12.81□□□□□ -0.36
USP28-204ENST00000537642 CD300AQ9UGN4 299 aa12.81□□□□□ -0.36
USP28-204ENST00000537642 PMF1-BGLAPU3KQ54 211 aa12.81□□□□□ -0.36
USP28-204ENST00000537642 FN1P02751 2386 aaKnown RBP12.81□□□□□ -0.36
USP28-204ENST00000537642 NIPBLQ6KC79 2804 aaeCLIP12.81□□□□□ -0.36
USP28-204ENST00000537642 NSD1Q96L73 2696 aaPredicted RBP12.8□□□□□ -0.36
USP28-204ENST00000537642 TRAV27A0A087WT01 109 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 EFCAB9A8MZ26 197 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 DYNC1I1O14576 645 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 PDE5AO76074 875 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 UBL3O95164 117 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 OR8G3PP0DMU2 310 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 SAGP10523 405 aaPredicted RBP12.8□□□□□ -0.36
USP28-204ENST00000537642 BMP4P12644 408 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 HSD17B1P14061 328 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 TCN1P20061 433 aaPredicted RBP12.8□□□□□ -0.36
USP28-204ENST00000537642 THBS4P35443 961 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 PTDSS1P48651 473 aaKnown RBP12.8□□□□□ -0.36
USP28-204ENST00000537642 ZNF133P52736 654 aaPredicted RBP12.8□□□□□ -0.36
USP28-204ENST00000537642 NUDT6P53370 316 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 EFNB3Q15768 340 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 ZNF730Q6ZMV8 503 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 MBOAT2Q6ZWT7 520 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 HDDC2Q7Z4H3 204 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 CYP4Z1Q86W10 505 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 ANKS4BQ8N8V4 417 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 MAPK1IP1LQ8NDC0 245 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 OR13C2Q8NGS9 318 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 OR51A7Q8NH64 312 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 NMD3Q96D46 503 aaKnown RBP12.8□□□□□ -0.36
USP28-204ENST00000537642 POM121Q96HA1 1249 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 C7orf34Q96L11 122 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 TNFRSF13CQ96RJ3 184 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 SH3GL3Q99963 347 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 REG4Q9BYZ8 158 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 ANKRD19PQ9H560 264 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 DENND2DQ9H6A0 471 aaPredicted RBP12.8□□□□□ -0.36
USP28-204ENST00000537642 ZNF442Q9H7R0 627 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 GORASP2Q9H8Y8 452 aa12.8□□□□□ -0.36
USP28-204ENST00000537642 SAMD4AQ9UPU9 718 aaKnown RBP12.8□□□□□ -0.36
USP28-204ENST00000537642 ABCA1O95477 2261 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 IGHV4-30-2A0A087WSY4 118 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 IGKV1D-43A0A0B4J1Z2 117 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 B9A039 149 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 CDC42EP2O14613 210 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 GMNNO75496 209 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 SLC2A10O95528 541 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 RAB36O95755 333 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 IGHMP01871 453 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 ZNF35P13682 527 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 RHCEP18577 417 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 MSX2P35548 267 aaPredicted RBP12.79□□□□□ -0.36
USP28-204ENST00000537642 GPR4P46093 362 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 CTXN1P60606 82 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 RPL27P61353 136 aaKnown RBP12.79□□□□□ -0.36
USP28-204ENST00000537642 SNRPD2P62316 118 aaKnown RBP12.79□□□□□ -0.36
USP28-204ENST00000537642 VLDLRP98155 873 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 SNTB2Q13425 540 aaKnown RBP12.79□□□□□ -0.36
USP28-204ENST00000537642 TOP3AQ13472 1001 aaPredicted RBP12.79□□□□□ -0.36
USP28-204ENST00000537642 DAG1Q14118 895 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 RAB39AQ14964 217 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 TAF11Q15544 211 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 IQCCQ4KMZ1 466 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 C10orf128Q5T292 105 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 KRT80Q6KB66 452 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 PODNL1Q6PEZ8 512 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 OAFQ86UD1 273 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 IGFN1Q86VF2 1251 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 ZNF584Q8IVC4 421 aa12.79□□□□□ -0.36
USP28-204ENST00000537642 OR10H5Q8NGA6 315 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms