RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 KIAA1257Q9ULG3 409 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 TRAPPC4Q9Y296 219 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 WSB1Q9Y6I7 421 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 ASTN1O14525 1302 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 MSH6P52701 1360 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 PHF3Q92576 2039 aaKnown RBP1.79□□□□□ -2.12
CD44-238ENST00000534296 NFASCO94856 1347 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 MAP3K15Q6ZN16 1313 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 CDHR2Q9BYE9 1310 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 A0A1W2PP18 115 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 A0A1W2PPE3 182 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 GOLGA8OA6NCC3 632 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 TRIM64CA6NLI5 447 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 GOLGA8NF8WBI6 632 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 PANO1I0J062 215 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 FOXE1O00358 373 aaPredicted RBP1.78□□□□□ -2.12
CD44-238ENST00000534296 RNF13O43567 381 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 SUPT3HO75486 399 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 RAB3DO95716 219 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 AGTP01019 485 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 BGLAPP02818 100 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 FABP3P05413 133 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 RETP07949 1114 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 UQCRFS1P1P0C7P4 283 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 SMIM10L1P0DMW3 83 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 TDGF1P13385 188 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 RCC1P18754 421 aaPredicted RBP1.78□□□□□ -2.12
CD44-238ENST00000534296 SERPINB5P36952 375 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 VHLP40337 213 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 CXCL5P42830 114 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 TDGF1P3P51864 188 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 RGS8P57771 180 aaPredicted RBP1.78□□□□□ -2.12
CD44-238ENST00000534296 VSX2P58304 361 aaPredicted RBP1.78□□□□□ -2.12
CD44-238ENST00000534296 PLP1P60201 277 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 ACTA2P62736 377 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 ACTG2P63267 376 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 ACTC1P68032 377 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 ADARB1P78563 741 aaKnown RBP1.78□□□□□ -2.12
CD44-238ENST00000534296 HMGCS1Q01581 520 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 ZNF92Q03936 586 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 BST1Q10588 318 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 PSG5Q15238 335 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 SGCAQ16586 387 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 UBE2SQ16763 222 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 TTLL9Q3SXZ7 439 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 ARMC12Q5T9G4 340 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 C9orf135Q5VTT2 229 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 OR52W1Q6IF63 320 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 ZNF621Q6ZSS3 439 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 STRADAQ7RTN6 431 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 CDH26Q8IXH8 852 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 H1FOOQ8IZA3 346 aaPredicted RBP1.78□□□□□ -2.12
CD44-238ENST00000534296 ZADH2Q8N4Q0 377 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 SDR9C7Q8NEX9 313 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 B3GNT7Q8NFL0 401 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 OR2L8Q8NGY9 312 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 MARCH1Q8TCQ1 289 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 SLC7A13Q8TCU3 470 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 ACTRT1Q8TDG2 376 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 CD300LFQ8TDQ1 290 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 TMEM158Q8WZ71 300 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 FGF14Q92915 247 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 FAM3DQ96BQ1 224 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 PIK3IP1Q96FE7 263 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 AURKBQ96GD4 344 aaPredicted RBP1.78□□□□□ -2.12
CD44-238ENST00000534296 SMIM10Q96HG1 83 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 NUP58Q9BVL2 599 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 SLC17A9Q9BYT1 436 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 DEFB127Q9H1M4 99 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 SLCO1B3Q9NPD5 702 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 NMRK1Q9NWW6 199 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 XCL2Q9UBD3 114 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 CTSFQ9UBX1 484 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 CD84Q9UIB8 345 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 STARD10Q9Y365 291 aa1.78□□□□□ -2.12
CD44-238ENST00000534296 GTF3C1Q12789 2109 aa1.78□□□□□ -2.13
CD44-238ENST00000534296 USP47Q96K76 1375 aa1.77□□□□□ -2.13
CD44-238ENST00000534296 IGLV4-69A0A075B6H9 119 aa1.77□□□□□ -2.13
CD44-238ENST00000534296 F6UB75 175 aa1.77□□□□□ -2.13
CD44-238ENST00000534296 TRAF3IP2O43734 574 aaPredicted RBP1.77□□□□□ -2.13
CD44-238ENST00000534296 GABARAPO95166 117 aa1.77□□□□□ -2.13
CD44-238ENST00000534296 FGFR1OPO95684 399 aaKnown RBP1.77□□□□□ -2.13
CD44-238ENST00000534296 CLIC3O95833 236 aa1.77□□□□□ -2.13
CD44-238ENST00000534296 MOSP00540 346 aa1.77□□□□□ -2.13
CD44-238ENST00000534296 IGHV2-5P01817 119 aa1.77□□□□□ -2.13
CD44-238ENST00000534296 TPM2P07951 284 aa1.77□□□□□ -2.13
CD44-238ENST00000534296 ANXA5P08758 320 aa1.77□□□□□ -2.13
CD44-238ENST00000534296 KITLGP21583 273 aa1.77□□□□□ -2.13
CD44-238ENST00000534296 WARSP23381 471 aaKnown RBP1.77□□□□□ -2.13
CD44-238ENST00000534296 F2RP25116 425 aa1.77□□□□□ -2.13
CD44-238ENST00000534296 PBLDP30039 288 aaPredicted RBP1.77□□□□□ -2.13
CD44-238ENST00000534296 GDI1P31150 447 aa1.77□□□□□ -2.13
CD44-238ENST00000534296 NAMPTP43490 491 aa1.77□□□□□ -2.13
CD44-238ENST00000534296 TFPI2P48307 235 aa1.77□□□□□ -2.13
CD44-238ENST00000534296 CCR6P51684 374 aa1.77□□□□□ -2.13
CD44-238ENST00000534296 ARG2P78540 354 aa1.77□□□□□ -2.13
CD44-238ENST00000534296 ERCC8Q13216 396 aa1.77□□□□□ -2.13
CD44-238ENST00000534296 FZD2Q14332 565 aa1.77□□□□□ -2.13
CD44-238ENST00000534296 GK3PQ14409 553 aa1.77□□□□□ -2.13
CD44-238ENST00000534296 ZNF77Q15935 545 aa1.77□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms