RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 ARMC4Q5T2S8 1044 aa13.14□□□□□ -0.31
CPSF1-208ENST00000532560 FAM205BPQ63HN1 556 aa13.14□□□□□ -0.31
CPSF1-208ENST00000532560 CCDC36Q8IYA8 594 aa13.14□□□□□ -0.31
CPSF1-208ENST00000532560 NOXO1Q8NFA2 376 aa13.14□□□□□ -0.31
CPSF1-208ENST00000532560 KBTBD8Q8NFY9 601 aa13.14□□□□□ -0.31
CPSF1-208ENST00000532560 OR52J3Q8NH60 311 aa13.14□□□□□ -0.31
CPSF1-208ENST00000532560 OR51A7Q8NH64 312 aa13.14□□□□□ -0.31
CPSF1-208ENST00000532560 AKAP1Q92667 903 aaKnown RBP eCLIP13.14□□□□□ -0.31
CPSF1-208ENST00000532560 FAM46AQ96IP4 442 aaKnown RBP13.14□□□□□ -0.31
CPSF1-208ENST00000532560 RADILQ96JH8 1075 aa13.14□□□□□ -0.31
CPSF1-208ENST00000532560 FOXC2Q99958 501 aa13.14□□□□□ -0.31
CPSF1-208ENST00000532560 MRPL13Q9BYD1 178 aaKnown RBP13.14□□□□□ -0.31
CPSF1-208ENST00000532560 TRIM15Q9C019 465 aa13.14□□□□□ -0.31
CPSF1-208ENST00000532560 TXNIPQ9H3M7 391 aa13.14□□□□□ -0.31
CPSF1-208ENST00000532560 Q9H521 79 aa13.14□□□□□ -0.31
CPSF1-208ENST00000532560 POFUT2Q9Y2G5 429 aa13.14□□□□□ -0.31
CPSF1-208ENST00000532560 OTOGQ6ZRI0 2925 aa13.14□□□□□ -0.31
CPSF1-208ENST00000532560 CADP27708 2225 aa13.13□□□□□ -0.31
CPSF1-208ENST00000532560 SHISA9B4DS77 424 aa13.13□□□□□ -0.31
CPSF1-208ENST00000532560 ACOT8O14734 319 aa13.13□□□□□ -0.31
CPSF1-208ENST00000532560 NR2C1P13056 603 aa13.13□□□□□ -0.31
CPSF1-208ENST00000532560 RRM2P31350 389 aa13.13□□□□□ -0.31
CPSF1-208ENST00000532560 CLRN1P58418 232 aa13.13□□□□□ -0.31
CPSF1-208ENST00000532560 RUNX1T1Q06455 604 aa13.13□□□□□ -0.31
CPSF1-208ENST00000532560 HIST3H3Q16695 136 aa13.13□□□□□ -0.31
CPSF1-208ENST00000532560 C3orf36Q3SXR2 165 aa13.13□□□□□ -0.31
CPSF1-208ENST00000532560 ZNF672Q499Z4 452 aaPredicted RBP13.13□□□□□ -0.31
CPSF1-208ENST00000532560 ZBED5Q49AG3 693 aa13.13□□□□□ -0.31
CPSF1-208ENST00000532560 TMEM154Q6P9G4 183 aa13.13□□□□□ -0.31
CPSF1-208ENST00000532560 LRFN4Q6PJG9 635 aa13.13□□□□□ -0.31
CPSF1-208ENST00000532560 ZNF611Q8N823 705 aa13.13□□□□□ -0.31
CPSF1-208ENST00000532560 FAM169BQ8N8A8 192 aa13.13□□□□□ -0.31
CPSF1-208ENST00000532560 LILRB1Q8NHL6 650 aaPredicted RBP13.13□□□□□ -0.31
CPSF1-208ENST00000532560 FBXW5Q969U6 566 aa13.13□□□□□ -0.31
CPSF1-208ENST00000532560 LRGUKQ96M69 825 aa13.13□□□□□ -0.31
CPSF1-208ENST00000532560 ALPK1Q96QP1 1244 aa13.13□□□□□ -0.31
CPSF1-208ENST00000532560 TNFRSF13CQ96RJ3 184 aa13.13□□□□□ -0.31
CPSF1-208ENST00000532560 FOXB1Q99853 325 aa13.13□□□□□ -0.31
CPSF1-208ENST00000532560 NDEL1Q9GZM8 345 aa13.13□□□□□ -0.31
CPSF1-208ENST00000532560 CXXC4Q9H2H0 198 aa13.13□□□□□ -0.31
CPSF1-208ENST00000532560 BEX4Q9NWD9 120 aaPredicted RBP13.13□□□□□ -0.31
CPSF1-208ENST00000532560 CRNNQ9UBG3 495 aaPredicted RBP13.13□□□□□ -0.31
CPSF1-208ENST00000532560 ITGB1BP2Q9UKP3 347 aa13.13□□□□□ -0.31
CPSF1-208ENST00000532560 TEP1Q99973 2627 aaKnown RBP13.12□□□□□ -0.31
CPSF1-208ENST00000532560 ROS1P08922 2347 aa13.12□□□□□ -0.31
CPSF1-208ENST00000532560 AKAP9Q99996 3911 aa13.12□□□□□ -0.31
CPSF1-208ENST00000532560 TRMUO75648 421 aaKnown RBP13.12□□□□□ -0.31
CPSF1-208ENST00000532560 SEC14L2O76054 403 aa13.12□□□□□ -0.31
CPSF1-208ENST00000532560 IGLV1-44P01699 117 aa13.12□□□□□ -0.31
CPSF1-208ENST00000532560 B4GALT1P15291 398 aa13.12□□□□□ -0.31
CPSF1-208ENST00000532560 ZNF133P52736 654 aaPredicted RBP13.12□□□□□ -0.31
CPSF1-208ENST00000532560 ART1P52961 327 aa13.12□□□□□ -0.31
CPSF1-208ENST00000532560 CDH11P55287 796 aa13.12□□□□□ -0.31
CPSF1-208ENST00000532560 CTXN1P60606 82 aa13.12□□□□□ -0.31
CPSF1-208ENST00000532560 RPL27P61353 136 aaKnown RBP13.12□□□□□ -0.31
CPSF1-208ENST00000532560 CHRNB3Q05901 458 aa13.12□□□□□ -0.31
CPSF1-208ENST00000532560 SPOCK1Q08629 439 aa13.12□□□□□ -0.31
CPSF1-208ENST00000532560 TOP3AQ13472 1001 aaPredicted RBP13.12□□□□□ -0.31
CPSF1-208ENST00000532560 FLOT2Q14254 428 aa13.12□□□□□ -0.31
CPSF1-208ENST00000532560 DEFB113Q30KQ7 82 aa13.12□□□□□ -0.31
CPSF1-208ENST00000532560 FAM98BQ52LJ0 330 aaKnown RBP13.12□□□□□ -0.31
CPSF1-208ENST00000532560 OGFRL1Q5TC84 451 aaPredicted RBP13.12□□□□□ -0.31
CPSF1-208ENST00000532560 ZNF813Q6ZN06 617 aa13.12□□□□□ -0.31
CPSF1-208ENST00000532560 IGFN1Q86VF2 1251 aa13.12□□□□□ -0.31
CPSF1-208ENST00000532560 PQLC1Q8N2U9 271 aa13.12□□□□□ -0.31
CPSF1-208ENST00000532560 ZNF519Q8TB69 540 aa13.12□□□□□ -0.31
CPSF1-208ENST00000532560 IGFBPL1Q8WX77 278 aa13.12□□□□□ -0.31
CPSF1-208ENST00000532560 PIGTQ969N2 578 aa13.12□□□□□ -0.31
CPSF1-208ENST00000532560 NMD3Q96D46 503 aaKnown RBP13.12□□□□□ -0.31
CPSF1-208ENST00000532560 SLC38A2Q96QD8 506 aa13.12□□□□□ -0.31
CPSF1-208ENST00000532560 TSPAN32Q96QS1 320 aa13.12□□□□□ -0.31
CPSF1-208ENST00000532560 GPX7Q96SL4 187 aaPredicted RBP13.12□□□□□ -0.31
CPSF1-208ENST00000532560 KCNK17Q96T54 332 aa13.12□□□□□ -0.31
CPSF1-208ENST00000532560 CCL19Q99731 98 aa13.12□□□□□ -0.31
CPSF1-208ENST00000532560 ALG12Q9BV10 488 aa13.12□□□□□ -0.31
CPSF1-208ENST00000532560 C1QTNF6Q9BXI9 259 aa13.12□□□□□ -0.31
CPSF1-208ENST00000532560 AURKCQ9UQB9 309 aa13.12□□□□□ -0.31
CPSF1-208ENST00000532560 SIGLEC7Q9Y286 467 aa13.12□□□□□ -0.31
CPSF1-208ENST00000532560 UNC119BA6NIH7 251 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 A6NIZ1 184 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 AQP12BA6NM10 295 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 H0YJX3 145 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 DHHO43323 396 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 TMCC2O75069 709 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 IGKV3-15P01624 115 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 CD14P08571 375 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 QDPRP09417 244 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 ZNF26P17031 533 aaPredicted RBP13.11□□□□□ -0.31
CPSF1-208ENST00000532560 RAP1BP61224 184 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 RAP1AP62834 184 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 TUBA1BP68363 451 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 TUBA4AP68366 448 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 MED21Q13503 144 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 NRN1LQ496H8 165 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 C10orf128Q5T292 105 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 TUBA1AQ71U36 451 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 ZER1Q7Z7L7 766 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 AQP12AQ8IXF9 295 aa13.11□□□□□ -0.31
CPSF1-208ENST00000532560 PIAS4Q8N2W9 510 aaPredicted RBP13.11□□□□□ -0.31
CPSF1-208ENST00000532560 SYT14Q8NB59 555 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms