RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 LINC01590Q5TEZ4 76 aa18.92■□□□□ 0.62
VPS28-212ENST00000530836 NHLRC1Q6VVB1 395 aa18.92■□□□□ 0.62
VPS28-212ENST00000530836 B3GLCTQ6Y288 498 aa18.92■□□□□ 0.62
VPS28-212ENST00000530836 LHFPL3Q86UP9 236 aa18.92■□□□□ 0.62
VPS28-212ENST00000530836 OR6V1Q8N148 313 aa18.92■□□□□ 0.62
VPS28-212ENST00000530836 FAM109AQ8N4B1 249 aa18.92■□□□□ 0.62
VPS28-212ENST00000530836 OR10H4Q8NGA5 316 aa18.92■□□□□ 0.62
VPS28-212ENST00000530836 FNDC8Q8TC99 324 aa18.92■□□□□ 0.62
VPS28-212ENST00000530836 ZMYND19Q96E35 227 aaPredicted RBP18.92■□□□□ 0.62
VPS28-212ENST00000530836 ADAD1Q96M93 576 aaKnown RBP18.92■□□□□ 0.62
VPS28-212ENST00000530836 MNTQ99583 582 aa18.92■□□□□ 0.62
VPS28-212ENST00000530836 SRA1Q9HD15 236 aaKnown RBP18.92■□□□□ 0.62
VPS28-212ENST00000530836 SLC22A23A1A5C7 686 aa18.92■□□□□ 0.62
VPS28-212ENST00000530836 CENPBD1B2RD01 187 aa18.92■□□□□ 0.62
VPS28-212ENST00000530836 B8ZZF3 427 aa18.92■□□□□ 0.62
VPS28-212ENST00000530836 CCRL2O00421 344 aa18.92■□□□□ 0.62
VPS28-212ENST00000530836 TNFSF11O14788 317 aa18.92■□□□□ 0.62
VPS28-212ENST00000530836 CARD18P57730 90 aa18.92■□□□□ 0.62
VPS28-212ENST00000530836 PPIAP62937 165 aaKnown RBP18.92■□□□□ 0.62
VPS28-212ENST00000530836 HSF2Q03933 536 aa18.92■□□□□ 0.62
VPS28-212ENST00000530836 ACSM1Q08AH1 577 aa18.92■□□□□ 0.62
VPS28-212ENST00000530836 HBMQ6B0K9 141 aa18.92■□□□□ 0.62
VPS28-212ENST00000530836 GGNQ86UU5 652 aa18.92■□□□□ 0.62
VPS28-212ENST00000530836 EGFL6Q8IUX8 553 aa18.92■□□□□ 0.62
VPS28-212ENST00000530836 PM20D2Q8IYS1 436 aa18.92■□□□□ 0.62
VPS28-212ENST00000530836 GHDCQ8N2G8 530 aa18.92■□□□□ 0.62
VPS28-212ENST00000530836 OR2V1Q8NHB1 315 aa18.92■□□□□ 0.62
VPS28-212ENST00000530836 C12orf43Q96C57 262 aaKnown RBP18.92■□□□□ 0.62
VPS28-212ENST00000530836 ZNF649Q9BS31 505 aa18.92■□□□□ 0.62
VPS28-212ENST00000530836 SF3B5Q9BWJ5 86 aaKnown RBP18.92■□□□□ 0.62
VPS28-212ENST00000530836 COL6A6A6NMZ7 2263 aa18.91■□□□□ 0.62
VPS28-212ENST00000530836 EIF1AYO14602 144 aaKnown RBP18.91■□□□□ 0.62
VPS28-212ENST00000530836 GABARAPO95166 117 aa18.91■□□□□ 0.62
VPS28-212ENST00000530836 NR2C1P13056 603 aa18.91■□□□□ 0.62
VPS28-212ENST00000530836 LIPAP38571 399 aa18.91■□□□□ 0.62
VPS28-212ENST00000530836 MAGEA5P43359 124 aa18.91■□□□□ 0.62
VPS28-212ENST00000530836 BDH1Q02338 343 aa18.91■□□□□ 0.62
VPS28-212ENST00000530836 MELKQ14680 651 aa18.91■□□□□ 0.62
VPS28-212ENST00000530836 SLC10A1Q14973 349 aa18.91■□□□□ 0.62
VPS28-212ENST00000530836 INAQ16352 499 aa18.91■□□□□ 0.62
VPS28-212ENST00000530836 BCL2A1Q16548 175 aa18.91■□□□□ 0.62
VPS28-212ENST00000530836 TIMM50Q3ZCQ8 353 aa18.91■□□□□ 0.62
VPS28-212ENST00000530836 PNPLA5Q7Z6Z6 429 aaPredicted RBP18.91■□□□□ 0.62
VPS28-212ENST00000530836 GPAT4Q86UL3 456 aa18.91■□□□□ 0.62
VPS28-212ENST00000530836 OR51L1Q8NGJ5 315 aa18.91■□□□□ 0.62
VPS28-212ENST00000530836 OR6X1Q8NH79 312 aa18.91■□□□□ 0.62
VPS28-212ENST00000530836 ADGRG7Q96K78 797 aa18.91■□□□□ 0.62
VPS28-212ENST00000530836 KCNK17Q96T54 332 aa18.91■□□□□ 0.62
VPS28-212ENST00000530836 NUAK2Q9H093 628 aa18.91■□□□□ 0.62
VPS28-212ENST00000530836 TSPAN10Q9H1Z9 355 aaPredicted RBP18.91■□□□□ 0.62
VPS28-212ENST00000530836 PAQR5Q9NXK6 330 aaPredicted RBP18.91■□□□□ 0.62
VPS28-212ENST00000530836 B9D1Q9UPM9 204 aa18.91■□□□□ 0.62
VPS28-212ENST00000530836 TTLL8A6PVC2 850 aa18.9■□□□□ 0.62
VPS28-212ENST00000530836 FAM166BA8MTA8 275 aa18.9■□□□□ 0.62
VPS28-212ENST00000530836 H3BMQ9 156 aa18.9■□□□□ 0.62
VPS28-212ENST00000530836 H7C1C5 153 aa18.9■□□□□ 0.62
VPS28-212ENST00000530836 AKAP8O43823 692 aaKnown RBP18.9■□□□□ 0.62
VPS28-212ENST00000530836 MRPL3P09001 348 aaKnown RBP18.9■□□□□ 0.62
VPS28-212ENST00000530836 ENPP1P22413 925 aa18.9■□□□□ 0.62
VPS28-212ENST00000530836 TGFBR2P37173 567 aa18.9■□□□□ 0.62
VPS28-212ENST00000530836 SH3BGRP55822 239 aaPredicted RBP18.9■□□□□ 0.62
VPS28-212ENST00000530836 LCN6P62502 163 aa18.9■□□□□ 0.62
VPS28-212ENST00000530836 ZNF322Q6U7Q0 402 aaPredicted RBP18.9■□□□□ 0.62
VPS28-212ENST00000530836 SLC16A9Q7RTY1 509 aa18.9■□□□□ 0.62
VPS28-212ENST00000530836 SLC35F2Q8IXU6 374 aa18.9■□□□□ 0.62
VPS28-212ENST00000530836 ZNF485Q8NCK3 441 aa18.9■□□□□ 0.62
VPS28-212ENST00000530836 CPNE4Q96A23 557 aaPredicted RBP18.9■□□□□ 0.62
VPS28-212ENST00000530836 NMD3Q96D46 503 aaKnown RBP18.9■□□□□ 0.62
VPS28-212ENST00000530836 OPALINQ96PE5 141 aa18.9■□□□□ 0.62
VPS28-212ENST00000530836 TSSK2Q96PF2 358 aa18.9■□□□□ 0.62
VPS28-212ENST00000530836 ALG8Q9BVK2 526 aa18.9■□□□□ 0.62
VPS28-212ENST00000530836 MARCH7Q9H992 704 aa18.9■□□□□ 0.62
VPS28-212ENST00000530836 PTTG2Q9NZH5 202 aa18.9■□□□□ 0.62
VPS28-212ENST00000530836 TRAF3IP2O43734 574 aaPredicted RBP18.89■□□□□ 0.62
VPS28-212ENST00000530836 ACTL6AO96019 429 aa18.89■□□□□ 0.62
VPS28-212ENST00000530836 IGHG1P01857 330 aa18.89■□□□□ 0.62
VPS28-212ENST00000530836 PYCR1P32322 319 aa18.89■□□□□ 0.62
VPS28-212ENST00000530836 RFC3P40938 356 aa18.89■□□□□ 0.62
VPS28-212ENST00000530836 BIDP55957 195 aa18.89■□□□□ 0.62
VPS28-212ENST00000530836 CLDN20P56880 219 aa18.89■□□□□ 0.62
VPS28-212ENST00000530836 ACTA2P62736 377 aa18.89■□□□□ 0.62
VPS28-212ENST00000530836 ACTG2P63267 376 aa18.89■□□□□ 0.62
VPS28-212ENST00000530836 CISD2Q8N5K1 135 aaKnown RBP18.89■□□□□ 0.62
VPS28-212ENST00000530836 SLC25A44Q96H78 314 aaPredicted RBP18.89■□□□□ 0.62
VPS28-212ENST00000530836 RBP7Q96R05 134 aa18.89■□□□□ 0.62
VPS28-212ENST00000530836 MED29Q9NX70 200 aa18.89■□□□□ 0.62
VPS28-212ENST00000530836 PRRC2CQ9Y520 2896 aaKnown RBP18.89■□□□□ 0.61
VPS28-212ENST00000530836 TRIM64BA6NI03 449 aa18.89■□□□□ 0.61
VPS28-212ENST00000530836 ZNF726A6NNF4 738 aa18.89■□□□□ 0.61
VPS28-212ENST00000530836 DCTN6O00399 190 aa18.89■□□□□ 0.61
VPS28-212ENST00000530836 SLC16A7O60669 478 aa18.89■□□□□ 0.61
VPS28-212ENST00000530836 GLO1Q04760 184 aa18.89■□□□□ 0.61
VPS28-212ENST00000530836 TSTQ16762 297 aaKnown RBP18.89■□□□□ 0.61
VPS28-212ENST00000530836 THEM4Q5T1C6 240 aa18.89■□□□□ 0.61
VPS28-212ENST00000530836 OR2G6Q5TZ20 316 aa18.89■□□□□ 0.61
VPS28-212ENST00000530836 SLC16A12Q6ZSM3 486 aa18.89■□□□□ 0.61
VPS28-212ENST00000530836 MEIOBQ8N635 442 aa18.89■□□□□ 0.61
VPS28-212ENST00000530836 ZNRF4Q8WWF5 429 aa18.89■□□□□ 0.61
VPS28-212ENST00000530836 GATAD2BQ8WXI9 593 aa18.89■□□□□ 0.61
VPS28-212ENST00000530836 SNRNP40Q96DI7 357 aaKnown RBP18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms