RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 IL10RAQ13651 578 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 C2orf76Q3KRA6 126 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 ARHGAP40Q5TG30 622 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 STK35Q8TDR2 534 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 SLC25A36Q96CQ1 311 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 MMABQ96EY8 250 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 ATG5Q9H1Y0 275 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 ELOVL3Q9HB03 270 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 ZC4H2Q9NQZ6 224 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 HIF3AQ9Y2N7 669 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 RWDD3Q9Y3V2 267 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 ARID1AO14497 2285 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 CDC14CA4D256 554 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 GGT3PA6NGU5 568 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 F5H5P2 479 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 ITGA5P08648 1049 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 GABRA1P14867 456 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 ALOX5APP20292 161 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 SDHAP31040 664 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 FNTBP49356 437 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 ARHGDIBP52566 201 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 EGR4Q05215 589 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 SQSTM1Q13501 440 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 MESTQ5EB52 335 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 ZNF321PQ8N8H1 164 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 MMP25Q9NPA2 562 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 STEAP1Q9UHE8 339 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 PFDN2Q9UHV9 154 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 SLC6A5Q9Y345 797 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 DENND4AQ7Z401 1863 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 PRAMEF2O60811 474 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 CTAG2O75638 210 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 PRSS3P35030 304 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 GPR3P46089 330 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 MEP1BQ16820 701 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 WDR38Q5JTN6 314 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 ARSKQ6UWY0 536 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 KCTD20Q7Z5Y7 419 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 PRSS35Q8N3Z0 413 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 HOXB13Q92826 284 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 PMEPA1Q969W9 287 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 ADOQ96SZ5 270 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 NRSN2Q9GZP1 204 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 MFFQ9GZY8 342 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 TRANK1O15050 2925 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 MFSD2BA6NFX1 497 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 TRIM77I1YAP6 450 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 M0QYG6 137 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 CLDN4O14493 209 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 TSPAN9O75954 239 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 TACR3P29371 465 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 OR10K2Q6IF99 312 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 TMEM205Q6UW68 189 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 GSG1LQ6UXU4 331 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 CFAP77Q6ZQR2 320 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 HDDC2Q7Z4H3 204 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 ZNF417Q8TAU3 575 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 RPS4Y2Q8TD47 263 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 TSPAN32Q96QS1 320 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 MED11Q9P086 117 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 RABL2AQ9UBK7 228 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 RABL2BQ9UNT1 228 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 MRPS33Q9Y291 106 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 ETV7Q9Y603 341 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 DOCK8Q8NF50 2099 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 TRBV5-5A0A0J9YX44 114 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 NUDT14O95848 222 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 POU2F2P09086 479 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 MST1P26927 711 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 HHEXQ03014 270 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 LRRC37A5PQ49AS3 106 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 FAM74A1Q5RGS3 127 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 B3GNTL1Q67FW5 361 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 WBP2NLQ6ICG8 309 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 TSSK4Q6SA08 328 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 MDGA2Q7Z553 956 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 CDC20BQ86Y33 519 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 SDR16C5Q8N3Y7 309 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 EXD3Q8N9H8 876 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 PNPLA2Q96AD5 504 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 ELSPBP1Q96BH3 223 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 SESN1Q9Y6P5 492 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 TMEM272A0A1B0GTI8 110 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 SLC22A23A1A5C7 686 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 B4DGG1 531 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 KIR3DL2P43630 455 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 KLHL26Q53HC5 615 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 NKAIN2Q5VXU1 208 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 ANKRD16Q6P6B7 361 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 ZNF627Q7L945 461 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 ATG4DQ86TL0 474 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 ZNF454Q8N9F8 522 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 FAM3DQ96BQ1 224 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 INTS14Q96SY0 518 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 OR8D2Q9GZM6 311 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 GPR160Q9UJ42 338 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 LOC100509620A0A075B734 347 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 DCDC2BA2VCK2 349 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 ATP6V1G2-DDX39BF2Z307 99 aa8.38□□□□□ -1.07
LIMCH1-215ENST00000512632 WISP1O95388 367 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms