RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 DNAJC19Q96DA6 116 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 CCDC126Q96EE4 140 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 TSSK3Q96PN8 268 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 ATP5SQ99766 215 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 CDC42EP4Q9H3Q1 356 aaKnown RBP2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 CWH43Q9H720 699 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 SLCO1B3Q9NPD5 702 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 SHPKQ9UHJ6 478 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 F11RQ9Y624 299 aaKnown RBP2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 NFASCO94856 1347 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 CEMIPQ8WUJ3 1361 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 USP47Q96K76 1375 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 CHD4Q14839 1912 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 SMCO3A2RU48 225 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 CTAGE15A4D2H0 777 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 TMX2-CTNND1H3BSU7 103 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 RNF13O43567 381 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 ICOSLGO75144 302 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 SS18L1O75177 396 aaPredicted RBP2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 ERLIN1O75477 346 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 BGLAPP02818 100 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 ZNF30P17039 623 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 CXCL5P42830 114 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 TNNT2P45379 298 aaPredicted RBP2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 CCNHP51946 323 aaPredicted RBP2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 UCNP55089 124 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 CDH6P55285 790 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 PRMT2P55345 433 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 HMGCS1Q01581 520 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 IDI1Q13907 227 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 TTLL9Q3SXZ7 439 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 RAET1LQ5VY80 246 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 SLC8B1Q6J4K2 584 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 SASS6Q6UVJ0 657 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 LINC00173Q6ZV60 143 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 TMEM179Q6ZVK1 233 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 CTAGE6Q86UF2 777 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 ENTHD1Q8IYW4 607 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 PDIK1LQ8N165 341 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 MREGQ8N565 214 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 OR7G2Q8NG99 324 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 CD300LFQ8TDQ1 290 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 SRSF12Q8WXF0 261 aaKnown RBP2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 ZNF285Q96NJ3 590 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 SDHCQ99643 169 aaPredicted RBP2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 RPF2Q9H7B2 306 aaKnown RBP2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 ATRXP46100 2492 aa2.62□□□□□ -1.99
HMGB1P28-201ENST00000507778 IGLV11-55A0A075B6I3 123 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 TRAV39A0A0B4J263 110 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 CIB4A0PJX0 185 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 LRRIQ3A6PVS8 624 aaPredicted RBP2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 CDC7O00311 574 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 CLOCKO15516 846 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 HMMRO75330 724 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 CLIC3O95833 236 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 C6orf47O95873 294 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 AGTP01019 485 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 IGLV2-23P01705 113 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 PLEKP08567 350 aaPredicted RBP2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 HOXC4P09017 264 aaPredicted RBP2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 ZDHHC11BP0C7U3 371 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 CALM1P0DP23 149 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 CALM2P0DP24 149 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 CALM3P0DP25 149 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 FOXN2P32314 431 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 CDKN1BP46527 198 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 SSR4P51571 173 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 HERVK_113P61574 105 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 BEX3Q00994 111 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 SRSF5Q13243 272 aaKnown RBP2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 PRPSAP1Q14558 356 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 CLINT1Q14677 625 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 RSPO1Q2MKA7 263 aaPredicted RBP2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 HSP90AB3PQ58FF7 597 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 VAX1Q5SQQ9 334 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 AGBL2Q5U5Z8 902 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 CARD17Q5XLA6 110 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 Q6P435 159 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 TIFABQ6ZNK6 161 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 ZNF786Q8N393 782 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 BBS5Q8N3I7 341 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 MARCH1Q8TCQ1 289 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 LRRC58Q96CX6 371 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 PIK3IP1Q96FE7 263 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 ZNF578Q96N58 590 aaPredicted RBP2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 TSNARE1Q96NA8 513 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 TAAR1Q96RJ0 339 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 P2RX4Q99571 388 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 FAM192AQ9GZU8 254 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 IFI27L2Q9H2X8 130 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 ZNF223Q9UK11 482 aaPredicted RBP2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 KIAA1257Q9ULG3 409 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 CENPJQ9HC77 1338 aaPredicted RBP2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 CNTNAP1P78357 1384 aa2.61□□□□□ -1.99
HMGB1P28-201ENST00000507778 LTBP1Q14766 1721 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 PLAC8L1A1L4L8 177 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 HIDE1A8MVS5 230 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 C9JVG2 144 aa2.6□□□□□ -1.99
HMGB1P28-201ENST00000507778 AIM2O14862 343 aa2.6□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms