RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 BAMBIQ13145 260 aa14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 DNM1P46Q6ZS02 220 aa14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SPEM1Q8N4L4 309 aa14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 DNAAF1Q8NEP3 725 aa14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 C1orf216Q8TAB5 229 aa14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 PHOSPHO1Q8TCT1 267 aa14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ADAMTS18Q8TE60 1221 aa14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 CCDC74AQ96AQ1 378 aa14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 KTI12Q96EK9 354 aaPredicted RBP14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 MMABQ96EY8 250 aaPredicted RBP14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ZNF285Q96NJ3 590 aa14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 TSPAN32Q96QS1 320 aa14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SEC22CQ9BRL7 303 aa14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 MRI1Q9BV20 369 aa14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 TCF7L1Q9HCS4 588 aa14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ZC4H2Q9NQZ6 224 aa14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 UBQLN4Q9NRR5 601 aa14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 GMEB2Q9UKD1 530 aa14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 CABIN1Q9Y6J0 2220 aa14.58□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 OR4C45A6NMZ5 311 aa14.58□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 CHURC1-FNTBB4DL54 471 aa14.58□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 BCKDHBP21953 392 aa14.58□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 DCTDP32321 178 aa14.58□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 FNTBP49356 437 aa14.58□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ART1P52961 327 aa14.58□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 TAS2R20P59543 309 aa14.58□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 RPL18Q07020 188 aaKnown RBP14.58□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 EXOSC2Q13868 293 aaKnown RBP14.58□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 LINC00303Q3SY05 128 aa14.58□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 METTL11BQ5VVY1 283 aa14.58□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 KIAA0895LQ68EN5 471 aa14.58□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 FAAP20Q6NZ36 180 aa14.58□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 OR6V1Q8N148 313 aa14.58□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 OR10AC1Q8NH08 325 aa14.58□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 RADILQ96JH8 1075 aa14.58□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 CDCP1Q9H5V8 836 aa14.58□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 NOX3Q9HBY0 568 aa14.58□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 PIPOXQ9P0Z9 390 aa14.58□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 PRODH2Q9UF12 536 aa14.58□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ZNF318Q5VUA4 2279 aa14.58□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 MUC6Q6W4X9 2439 aa14.58□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 TRAV8-7A0A075B6U6 113 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 TRBV5-7A0A0A0MS05 114 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 AKR7A3O95154 331 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 IL33O95760 270 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 CFDP00746 253 aaPredicted RBP14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 CCR4P51679 360 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 SKP1P63208 163 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 PUDPQ08623 228 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 GRM7Q14831 915 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 POU4F3Q15319 338 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 LPAL2Q16609 132 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 GLDNQ6ZMI3 551 aaPredicted RBP14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 FAM220AQ7Z4H9 259 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 PARGQ86W56 976 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 MAML2Q8IZL2 1156 aaPredicted RBP14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 TCTN2Q96GX1 697 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 RBP7Q96R05 134 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 UTP23Q9BRU9 249 aaKnown RBP14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 EXOSC3Q9NQT5 275 aaKnown RBP14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 PCDHGA5Q9Y5G8 931 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 FKBP7Q9Y680 259 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 EP300Q09472 2414 aaPredicted RBP14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 C17orf105B2RV13 164 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 TOXO94900 526 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 GALNSP34059 522 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 CCR5P51681 352 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 EPHA4P54764 986 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 MRPS10P82664 201 aaKnown RBP14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 CHCHD2P9Q5T1J5 151 aaPredicted RBP14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 OR2G2Q8NGZ5 317 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 PTPMT1Q8WUK0 201 aaPredicted RBP14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 NSMAFQ92636 917 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 LRRC61Q9BV99 259 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 RTN4RQ9BZR6 473 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 SLITRK2Q9H156 845 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 WDR76Q9H967 626 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ETV7Q9Y603 341 aa14.57□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 CELSR3Q9NYQ7 3312 aa14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ACOT7O00154 380 aa14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ZNF264O43296 627 aa14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 UTS2O95399 124 aa14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 GPANK1O95872 356 aa14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ALOX5APP20292 161 aa14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 MAPK3P27361 379 aaPredicted RBP14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 LCN1P31025 176 aa14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 RPS27P42677 84 aaKnown RBP14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 SLC37A1P57057 533 aa14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 SLC25A25Q6KCM7 469 aa14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 TAAR8Q969N4 342 aa14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 NXF5Q9H1B4 397 aaKnown RBP14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 CA10Q9NS85 328 aa14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 TAS2R10Q9NYW0 307 aa14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 GRHPRQ9UBQ7 328 aa14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ASPMQ8IZT6 3477 aa14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 GLSO94925 669 aaPredicted RBP14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 MECP2P51608 486 aaKnown RBP14.56□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 CBFBQ13951 182 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms