RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 ACP1P24666 158 aa9.67□□□□□ -0.86
USP4-214ENST00000491791 MAPK3P27361 379 aaPredicted RBP9.67□□□□□ -0.86
USP4-214ENST00000491791 ADH6P28332 368 aa9.67□□□□□ -0.86
USP4-214ENST00000491791 CRABP1P29762 137 aa9.67□□□□□ -0.86
USP4-214ENST00000491791 CASP3P42574 277 aa9.67□□□□□ -0.86
USP4-214ENST00000491791 FBXW4P57775 412 aa9.67□□□□□ -0.86
USP4-214ENST00000491791 NANOS3P60323 173 aaKnown RBP9.67□□□□□ -0.86
USP4-214ENST00000491791 INSM1Q01101 510 aaPredicted RBP9.67□□□□□ -0.86
USP4-214ENST00000491791 RASGEF1BQ0VAM2 473 aa9.67□□□□□ -0.86
USP4-214ENST00000491791 PCOLCEQ15113 449 aa9.67□□□□□ -0.86
USP4-214ENST00000491791 MS4A18Q3C1V0 323 aa9.67□□□□□ -0.86
USP4-214ENST00000491791 HSD17B12Q53GQ0 312 aa9.67□□□□□ -0.86
USP4-214ENST00000491791 IDNKQ5T6J7 187 aa9.67□□□□□ -0.86
USP4-214ENST00000491791 LIPNQ5VXI9 398 aa9.67□□□□□ -0.86
USP4-214ENST00000491791 ZNF544Q6NX49 715 aa9.67□□□□□ -0.86
USP4-214ENST00000491791 MZT2BQ6NZ67 158 aa9.67□□□□□ -0.86
USP4-214ENST00000491791 FAM220AQ7Z4H9 259 aa9.67□□□□□ -0.86
USP4-214ENST00000491791 RAB43Q86YS6 212 aa9.67□□□□□ -0.86
USP4-214ENST00000491791 FADS6Q8N9I5 356 aa9.67□□□□□ -0.86
USP4-214ENST00000491791 NLGN4YQ8NFZ3 816 aaPredicted RBP9.67□□□□□ -0.86
USP4-214ENST00000491791 OR2I1PQ8NGU4 316 aa9.67□□□□□ -0.86
USP4-214ENST00000491791 ADAMTS14Q8WXS8 1223 aa9.67□□□□□ -0.86
USP4-214ENST00000491791 IMMP1LQ96LU5 166 aa9.67□□□□□ -0.86
USP4-214ENST00000491791 ADAD1Q96M93 576 aaKnown RBP9.67□□□□□ -0.86
USP4-214ENST00000491791 DERL3Q96Q80 235 aa9.67□□□□□ -0.86
USP4-214ENST00000491791 INTS14Q96SY0 518 aa9.67□□□□□ -0.86
USP4-214ENST00000491791 CRB3Q9BUF7 120 aa9.67□□□□□ -0.86
USP4-214ENST00000491791 CCDC86Q9H6F5 360 aaKnown RBP9.67□□□□□ -0.86
USP4-214ENST00000491791 OCIAD1Q9NX40 245 aa9.67□□□□□ -0.86
USP4-214ENST00000491791 SPATA2Q9UM82 520 aa9.67□□□□□ -0.86
USP4-214ENST00000491791 B3GALT5Q9Y2C3 310 aa9.67□□□□□ -0.86
USP4-214ENST00000491791 KLHDC2Q9Y2U9 406 aa9.67□□□□□ -0.86
USP4-214ENST00000491791 FREM2Q5SZK8 3169 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 CABIN1Q9Y6J0 2220 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 A0A087WZY1 265 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 SLC22A23A1A5C7 686 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 TMEM212A6NML5 194 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 AIPO00170 330 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 ARHGEF9O43307 516 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 GSTZ1O43708 216 aaPredicted RBP9.66□□□□□ -0.86
USP4-214ENST00000491791 SCO2O43819 266 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 AKR7A3O95154 331 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 ZFPL1O95159 310 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 UBL3O95164 117 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 OR6A2O95222 327 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 WISP1O95388 367 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 NUDT14O95848 222 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 IGHEP01854 428 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 HRGP04196 525 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 CALCBP10092 127 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 ATF1P18846 271 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 SRMP19623 302 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 HLA-DMAP28067 261 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 CCKBRP32239 447 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 TALDO1P37837 337 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 MNDAP41218 407 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 PITPNBP48739 271 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 DAP3P51398 398 aaKnown RBP9.66□□□□□ -0.86
USP4-214ENST00000491791 OR2B6P58173 313 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 DBPQ10586 325 aaPredicted RBP9.66□□□□□ -0.86
USP4-214ENST00000491791 P2RY14Q15391 338 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 EXT1Q16394 746 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 Q499Y3 187 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 FAM27D1Q5T7N8 215 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 LCN10Q6JVE6 187 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 SHISA6Q6ZSJ9 500 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 H1FNTQ75WM6 255 aaPredicted RBP9.66□□□□□ -0.86
USP4-214ENST00000491791 AKAP14Q86UN6 197 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 LSRQ86X29 649 aaPredicted RBP9.66□□□□□ -0.86
USP4-214ENST00000491791 PM20D2Q8IYS1 436 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 ZBTB8BQ8NAP8 495 aaPredicted RBP9.66□□□□□ -0.86
USP4-214ENST00000491791 ZNF417Q8TAU3 575 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 M1APQ8TC57 530 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 ASB10Q8WXI3 467 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 RGP1Q92546 391 aaPredicted RBP9.66□□□□□ -0.86
USP4-214ENST00000491791 TRIM63Q969Q1 353 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 C8orf44Q96CB5 159 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 DDIT4LQ96D03 193 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 DCBLD2Q96PD2 775 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 TSSK2Q96PF2 358 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 OR8B4Q96RC9 309 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 ZNF587Q96SQ5 575 aaPredicted RBP9.66□□□□□ -0.86
USP4-214ENST00000491791 TSPAN10Q9H1Z9 355 aaPredicted RBP9.66□□□□□ -0.86
USP4-214ENST00000491791 SYT4Q9H2B2 425 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 SRA1Q9HD15 236 aaKnown RBP9.66□□□□□ -0.86
USP4-214ENST00000491791 B3GAT2Q9NPZ5 323 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 EXTL2Q9UBQ6 330 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 CAMK2AQ9UQM7 478 aa9.66□□□□□ -0.86
USP4-214ENST00000491791 PCDHGA9Q9Y5G4 932 aaKnown RBP9.66□□□□□ -0.86
USP4-214ENST00000491791 HMX3A6NHT5 357 aa9.65□□□□□ -0.86
USP4-214ENST00000491791 LIPT2A6NK58 231 aa9.65□□□□□ -0.86
USP4-214ENST00000491791 C17orf51A8MQB3 221 aa9.65□□□□□ -0.86
USP4-214ENST00000491791 SULT1B1O43704 296 aa9.65□□□□□ -0.86
USP4-214ENST00000491791 SSX4O60224 188 aa9.65□□□□□ -0.86
USP4-214ENST00000491791 ZNF254O75437 659 aa9.65□□□□□ -0.86
USP4-214ENST00000491791 ITGA10O75578 1167 aa9.65□□□□□ -0.86
USP4-214ENST00000491791 KLF7O75840 302 aaPredicted RBP9.65□□□□□ -0.86
USP4-214ENST00000491791 EIF4EP06730 217 aaKnown RBP9.65□□□□□ -0.86
USP4-214ENST00000491791 KLK3P07288 261 aaPredicted RBP9.65□□□□□ -0.86
USP4-214ENST00000491791 PRKAR1AP10644 381 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms