RNA–Protein interactions for RNA: ENST00000487647.5

FGFR1-222, Transcript of fibroblast growth factor receptor 1, human

TSL 1 (best)

Gene FGFR1, Length 1,608 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FGFR1-222	ENST00000487647	MRPL13	Q9BYD1	178 aa	Known RBP	13.16	□□□□□ -0.3
FGFR1-222	ENST00000487647	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	13.16	□□□□□ -0.3
FGFR1-222	ENST00000487647	WDR76	Q9H967	626 aa		13.16	□□□□□ -0.3
FGFR1-222	ENST00000487647	MED29	Q9NX70	200 aa		13.16	□□□□□ -0.3
FGFR1-222	ENST00000487647	SF3B6	Q9Y3B4	125 aa	Known RBP	13.16	□□□□□ -0.3
FGFR1-222	ENST00000487647	TRDV1	A0A1B0GX56	115 aa		13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	HSPB2	A8KAH6	182 aa		13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	FAM171A2	A8MVW0	826 aa		13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	PLPP2	O43688	288 aa		13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	SULT1C4	O75897	302 aa		13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	LALBA	P00709	142 aa		13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	CD1A	P06126	327 aa		13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	TACSTD2	P09758	323 aa		13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	CTLA4	P16410	223 aa		13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	WT1	P19544	449 aa	Predicted RBP	13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	CEL	P19835	753 aa		13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	POU3F2	P20265	443 aa	Predicted RBP	13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	FGF9	P31371	208 aa	Predicted RBP	13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	CCL11	P51671	97 aa		13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	GBX2	P52951	348 aa	Predicted RBP	13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	CARD18	P57730	90 aa		13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	PLGLB1	Q02325	96 aa		13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	RUNX1T1	Q06455	604 aa		13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	EGR3	Q06889	387 aa		13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	SRSF6	Q13247	344 aa	Known RBP	13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	HSPB2	Q16082	182 aa		13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	GALNTL5	Q7Z4T8	443 aa		13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	GPAT4	Q86UL3	456 aa		13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	SLC22A16	Q86VW1	577 aa		13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	ZNF454	Q8N9F8	522 aa		13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	ASB17	Q8WXJ9	295 aa		13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	DACH2	Q96NX9	599 aa		13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	CENPO	Q9BU64	300 aa		13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	KLHL9	Q9P2J3	617 aa		13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	ZMIZ1	Q9ULJ6	1067 aa		13.15	□□□□□ -0.3
FGFR1-222	ENST00000487647	CFAP54	Q96N23	3096 aa		13.14	□□□□□ -0.31
FGFR1-222	ENST00000487647	ZNF726	A6NNF4	738 aa		13.14	□□□□□ -0.31
FGFR1-222	ENST00000487647		J3QLW9	94 aa		13.14	□□□□□ -0.31
FGFR1-222	ENST00000487647	TNFSF11	O14788	317 aa		13.14	□□□□□ -0.31
FGFR1-222	ENST00000487647	CEACAM4	O75871	244 aa		13.14	□□□□□ -0.31
FGFR1-222	ENST00000487647	CLPX	O76031	633 aa		13.14	□□□□□ -0.31
FGFR1-222	ENST00000487647	HRG	P04196	525 aa		13.14	□□□□□ -0.31
FGFR1-222	ENST00000487647	ZNF19	P17023	458 aa		13.14	□□□□□ -0.31
FGFR1-222	ENST00000487647	CD97	P48960	835 aa		13.14	□□□□□ -0.31
FGFR1-222	ENST00000487647	MEOX1	P50221	254 aa		13.14	□□□□□ -0.31
FGFR1-222	ENST00000487647	TNFSF10	P50591	281 aa		13.14	□□□□□ -0.31
FGFR1-222	ENST00000487647	OR12D2	P58182	307 aa		13.14	□□□□□ -0.31
FGFR1-222	ENST00000487647	RPS3A	P61247	264 aa	Known RBP	13.14	□□□□□ -0.31
FGFR1-222	ENST00000487647	DBP	Q10586	325 aa	Predicted RBP	13.14	□□□□□ -0.31
FGFR1-222	ENST00000487647	ZNF766	Q5HY98	468 aa		13.14	□□□□□ -0.31
FGFR1-222	ENST00000487647	HBM	Q6B0K9	141 aa		13.14	□□□□□ -0.31
FGFR1-222	ENST00000487647	GGN	Q86UU5	652 aa		13.14	□□□□□ -0.31
FGFR1-222	ENST00000487647	OR2V1	Q8NHB1	315 aa		13.14	□□□□□ -0.31
FGFR1-222	ENST00000487647	ADGRG7	Q96K78	797 aa		13.14	□□□□□ -0.31
FGFR1-222	ENST00000487647	ACKR4	Q9NPB9	350 aa		13.14	□□□□□ -0.31
FGFR1-222	ENST00000487647	EXOSC4	Q9NPD3	245 aa	Known RBP	13.14	□□□□□ -0.31
FGFR1-222	ENST00000487647	LAMP5	Q9UJQ1	280 aa		13.14	□□□□□ -0.31
FGFR1-222	ENST00000487647	GSTK1	Q9Y2Q3	226 aa		13.14	□□□□□ -0.31
FGFR1-222	ENST00000487647	A3GALT2	U3KPV4	340 aa		13.14	□□□□□ -0.31
FGFR1-222	ENST00000487647	CPAMD8	Q8IZJ3	1885 aa		13.14	□□□□□ -0.31
FGFR1-222	ENST00000487647	DCDC2B	A2VCK2	349 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	ZNF814	B7Z6K7	855 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	ACOT7	O00154	380 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	EIF1AY	O14602	144 aa	Known RBP	13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	HLA-DQA2	P01906	255 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	ALOX5AP	P20292	161 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	ENPP1	P22413	925 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	PTGS2	P35354	604 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	HCCS	P53701	268 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	CLRN1	P58418	232 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	BCL2A1	Q16548	175 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	ZNF684	Q5T5D7	378 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	RPL22L1	Q6P5R6	122 aa	Known RBP	13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	SSX6	Q7RTT6	188 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	MS4A15	Q8N5U1	240 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	TMEM251	Q8N6I4	163 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	FDCSP	Q8NFU4	85 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	OTOS	Q8NHW6	89 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	CPNE4	Q96A23	557 aa	Predicted RBP	13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	INTS12	Q96CB8	462 aa	Known RBP	13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	HES7	Q9BYE0	225 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	RERGL	Q9H628	205 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	PAQR5	Q9NXK6	330 aa	Predicted RBP	13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	COPS3	Q9UNS2	423 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	SLC35F4	A4IF30	521 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	TVP23A	A6NH52	213 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	NPIPA2	E9PIF3	369 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	NPIPA3	F8WFD2	350 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	OGG1	O15527	345 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	PGA4	P0DJD7	388 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	PGA3	P0DJD8	388 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	TGM4	P49221	684 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	ENTPD1	P49961	510 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	CLDN20	P56880	219 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	RPS25	P62851	125 aa	Known RBP	13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	PPIA	P62937	165 aa	Known RBP	13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	SIRPA	P78324	504 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	SLC17A1	Q14916	467 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	DEFB109B	Q30KR1	87 aa		13.13	□□□□□ -0.31
FGFR1-222	ENST00000487647	TEX30	Q5JUR7	227 aa		13.13	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms