RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 TMEM38BQ9NVV0 291 aa18.37■□□□□ 0.53
HMGB3-205ENST00000455596 STX18Q9P2W9 335 aaKnown RBP18.37■□□□□ 0.53
HMGB3-205ENST00000455596 RHCGQ9UBD6 479 aa18.37■□□□□ 0.53
HMGB3-205ENST00000455596 ABCD2Q9UBJ2 740 aa18.37■□□□□ 0.53
HMGB3-205ENST00000455596 SNX13Q9Y5W8 968 aa18.37■□□□□ 0.53
HMGB3-205ENST00000455596 J3KTA2 159 aa18.36■□□□□ 0.53
HMGB3-205ENST00000455596 hCG_2039718K7EN88 272 aa18.36■□□□□ 0.53
HMGB3-205ENST00000455596 SNX3O60493 162 aa18.36■□□□□ 0.53
HMGB3-205ENST00000455596 TRMUO75648 421 aaKnown RBP18.36■□□□□ 0.53
HMGB3-205ENST00000455596 FARS2O95363 451 aaKnown RBP18.36■□□□□ 0.53
HMGB3-205ENST00000455596 ACADSP16219 412 aa18.36■□□□□ 0.53
HMGB3-205ENST00000455596 SLC25A16P16260 332 aa18.36■□□□□ 0.53
HMGB3-205ENST00000455596 GIPRP48546 466 aa18.36■□□□□ 0.53
HMGB3-205ENST00000455596 PPOXP50336 477 aa18.36■□□□□ 0.53
HMGB3-205ENST00000455596 PSME3P61289 254 aa18.36■□□□□ 0.53
HMGB3-205ENST00000455596 RUNX1T1Q06455 604 aa18.36■□□□□ 0.53
HMGB3-205ENST00000455596 TRAM2Q15035 370 aa18.36■□□□□ 0.53
HMGB3-205ENST00000455596 HIST3H3Q16695 136 aa18.36■□□□□ 0.53
HMGB3-205ENST00000455596 MOSPD2Q8NHP6 518 aa18.36■□□□□ 0.53
HMGB3-205ENST00000455596 MCHR2Q969V1 340 aa18.36■□□□□ 0.53
HMGB3-205ENST00000455596 HSH2DQ96JZ2 352 aa18.36■□□□□ 0.53
HMGB3-205ENST00000455596 ZNF347Q96SE7 839 aa18.36■□□□□ 0.53
HMGB3-205ENST00000455596 MRPL13Q9BYD1 178 aaKnown RBP18.36■□□□□ 0.53
HMGB3-205ENST00000455596 SPEF1Q9Y4P9 236 aa18.36■□□□□ 0.53
HMGB3-205ENST00000455596 NSD1Q96L73 2696 aaPredicted RBP18.36■□□□□ 0.53
HMGB3-205ENST00000455596 GMNCA6NCL1 334 aa18.35■□□□□ 0.53
HMGB3-205ENST00000455596 LY6HO94772 140 aa18.35■□□□□ 0.53
HMGB3-205ENST00000455596 ZNF35P13682 527 aa18.35■□□□□ 0.53
HMGB3-205ENST00000455596 DRD4P21917 467 aa18.35■□□□□ 0.53
HMGB3-205ENST00000455596 NR4A1P22736 598 aa18.35■□□□□ 0.53
HMGB3-205ENST00000455596 LSP1P33241 339 aa18.35■□□□□ 0.53
HMGB3-205ENST00000455596 ZNF84P51523 738 aa18.35■□□□□ 0.53
HMGB3-205ENST00000455596 MYBPC1Q00872 1141 aa18.35■□□□□ 0.53
HMGB3-205ENST00000455596 LAPTM4AQ15012 233 aa18.35■□□□□ 0.53
HMGB3-205ENST00000455596 ALG10Q5BKT4 473 aa18.35■□□□□ 0.53
HMGB3-205ENST00000455596 SYT14Q8NB59 555 aa18.35■□□□□ 0.53
HMGB3-205ENST00000455596 C10orf105Q8TEF2 133 aa18.35■□□□□ 0.53
HMGB3-205ENST00000455596 SEPHS2Q99611 448 aa18.35■□□□□ 0.53
HMGB3-205ENST00000455596 HIF3AQ9Y2N7 669 aa18.35■□□□□ 0.53
HMGB3-205ENST00000455596 FN1P02751 2386 aaKnown RBP18.34■□□□□ 0.53
HMGB3-205ENST00000455596 A0A096LNT2 108 aa18.34■□□□□ 0.53
HMGB3-205ENST00000455596 NPIPB13A6NJU9 1138 aa18.34■□□□□ 0.53
HMGB3-205ENST00000455596 NPIPB4C9JG80 1138 aa18.34■□□□□ 0.53
HMGB3-205ENST00000455596 FFAR1O14842 300 aa18.34■□□□□ 0.53
HMGB3-205ENST00000455596 PATE4P0C8F1 98 aa18.34■□□□□ 0.53
HMGB3-205ENST00000455596 SAGP10523 405 aaPredicted RBP18.34■□□□□ 0.53
HMGB3-205ENST00000455596 NCK1P16333 377 aa18.34■□□□□ 0.53
HMGB3-205ENST00000455596 PDLIM4P50479 330 aa18.34■□□□□ 0.53
HMGB3-205ENST00000455596 RAB39AQ14964 217 aa18.34■□□□□ 0.53
HMGB3-205ENST00000455596 TAF11Q15544 211 aa18.34■□□□□ 0.53
HMGB3-205ENST00000455596 NRN1LQ496H8 165 aa18.34■□□□□ 0.53
HMGB3-205ENST00000455596 ARMC4Q5T2S8 1044 aa18.34■□□□□ 0.53
HMGB3-205ENST00000455596 DPPA2Q7Z7J5 298 aa18.34■□□□□ 0.53
HMGB3-205ENST00000455596 OR4K5Q8NGD3 323 aa18.34■□□□□ 0.53
HMGB3-205ENST00000455596 FGFBP3Q8TAT2 258 aa18.34■□□□□ 0.53
HMGB3-205ENST00000455596 SH3GL3Q99963 347 aa18.34■□□□□ 0.53
HMGB3-205ENST00000455596 TXNIPQ9H3M7 391 aa18.34■□□□□ 0.53
HMGB3-205ENST00000455596 SPAG4Q9NPE6 437 aa18.34■□□□□ 0.53
HMGB3-205ENST00000455596 MAN2C1Q9NTJ4 1040 aa18.34■□□□□ 0.53
HMGB3-205ENST00000455596 RPS6KA6Q9UK32 745 aa18.34■□□□□ 0.53
HMGB3-205ENST00000455596 CMAHPQ9Y471 501 aa18.34■□□□□ 0.53
HMGB3-205ENST00000455596 NIPBLQ6KC79 2804 aaeCLIP18.33■□□□□ 0.53
HMGB3-205ENST00000455596 CD5LO43866 347 aa18.33■□□□□ 0.52
HMGB3-205ENST00000455596 SERPINA5P05154 406 aa18.33■□□□□ 0.52
HMGB3-205ENST00000455596 FUT4P22083 530 aa18.33■□□□□ 0.52
HMGB3-205ENST00000455596 LSM11P83369 360 aaKnown RBP eCLIP18.33■□□□□ 0.52
HMGB3-205ENST00000455596 GALK2Q01415 458 aa18.33■□□□□ 0.52
HMGB3-205ENST00000455596 PRKCDQ05655 676 aa18.33■□□□□ 0.52
HMGB3-205ENST00000455596 LOXL1Q08397 574 aaPredicted RBP18.33■□□□□ 0.52
HMGB3-205ENST00000455596 SLC36A2Q495M3 483 aa18.33■□□□□ 0.52
HMGB3-205ENST00000455596 TMEM53Q6P2H8 277 aa18.33■□□□□ 0.52
HMGB3-205ENST00000455596 CYP4Z1Q86W10 505 aa18.33■□□□□ 0.52
HMGB3-205ENST00000455596 NRMQ8IXM6 262 aa18.33■□□□□ 0.52
HMGB3-205ENST00000455596 RNF113BQ8IZP6 322 aaKnown RBP18.33■□□□□ 0.52
HMGB3-205ENST00000455596 SVOPLQ8N434 492 aa18.33■□□□□ 0.52
HMGB3-205ENST00000455596 ANKS4BQ8N8V4 417 aa18.33■□□□□ 0.52
HMGB3-205ENST00000455596 ACOT11Q8WXI4 607 aaPredicted RBP18.33■□□□□ 0.52
HMGB3-205ENST00000455596 DOK1Q99704 481 aa18.33■□□□□ 0.52
HMGB3-205ENST00000455596 RAB1BQ9H0U4 201 aa18.33■□□□□ 0.52
HMGB3-205ENST00000455596 RNF121Q9H920 327 aa18.33■□□□□ 0.52
HMGB3-205ENST00000455596 MYOZ1Q9NP98 299 aaPredicted RBP18.33■□□□□ 0.52
HMGB3-205ENST00000455596 ADA2Q9NZK5 511 aa18.33■□□□□ 0.52
HMGB3-205ENST00000455596 HIVEP2P31629 2446 aa18.33■□□□□ 0.52
HMGB3-205ENST00000455596 CSPG4Q6UVK1 2322 aa18.33■□□□□ 0.52
HMGB3-205ENST00000455596 ABCA1O95477 2261 aa18.32■□□□□ 0.52
HMGB3-205ENST00000455596 TMEM129A0AVI4 362 aa18.32■□□□□ 0.52
HMGB3-205ENST00000455596 TLX2O43763 284 aaPredicted RBP18.32■□□□□ 0.52
HMGB3-205ENST00000455596 ERCC1P07992 297 aaPredicted RBP18.32■□□□□ 0.52
HMGB3-205ENST00000455596 NR2C1P13056 603 aa18.32■□□□□ 0.52
HMGB3-205ENST00000455596 MAKP20794 623 aa18.32■□□□□ 0.52
HMGB3-205ENST00000455596 ZNF133P52736 654 aaPredicted RBP18.32■□□□□ 0.52
HMGB3-205ENST00000455596 GNGT1P63211 74 aa18.32■□□□□ 0.52
HMGB3-205ENST00000455596 ANKDD1AQ495B1 522 aa18.32■□□□□ 0.52
HMGB3-205ENST00000455596 C10orf128Q5T292 105 aa18.32■□□□□ 0.52
HMGB3-205ENST00000455596 GKAP1Q5VSY0 366 aaPredicted RBP18.32■□□□□ 0.52
HMGB3-205ENST00000455596 GLYATQ6IB77 296 aa18.32■□□□□ 0.52
HMGB3-205ENST00000455596 ZNF730Q6ZMV8 503 aa18.32■□□□□ 0.52
HMGB3-205ENST00000455596 SLC16A14Q7RTX9 510 aa18.32■□□□□ 0.52
HMGB3-205ENST00000455596 ZNF584Q8IVC4 421 aa18.32■□□□□ 0.52
HMGB3-205ENST00000455596 CDK20Q8IZL9 346 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms