RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 OR6X1Q8NH79 312 aa11.5□□□□□ -0.57
VPS33A-202ENST00000451053 ADAD1Q96M93 576 aaKnown RBP11.5□□□□□ -0.57
VPS33A-202ENST00000451053 NRIP3Q9NQ35 241 aa11.5□□□□□ -0.57
VPS33A-202ENST00000451053 NPDC1Q9NQX5 325 aaPredicted RBP11.5□□□□□ -0.57
VPS33A-202ENST00000451053 TVP23BQ9NYZ1 205 aa11.5□□□□□ -0.57
VPS33A-202ENST00000451053 MALT1Q9UDY8 824 aa11.5□□□□□ -0.57
VPS33A-202ENST00000451053 KLHL21Q9UJP4 597 aa11.5□□□□□ -0.57
VPS33A-202ENST00000451053 ZNF346Q9UL40 294 aaKnown RBP11.5□□□□□ -0.57
VPS33A-202ENST00000451053 RIIAD1A6NNX1 92 aa11.49□□□□□ -0.57
VPS33A-202ENST00000451053 CLIC3O95833 236 aa11.49□□□□□ -0.57
VPS33A-202ENST00000451053 ZNF3P17036 446 aa11.49□□□□□ -0.57
VPS33A-202ENST00000451053 PCYT1AP49585 367 aa11.49□□□□□ -0.57
VPS33A-202ENST00000451053 ISL1P61371 349 aa11.49□□□□□ -0.57
VPS33A-202ENST00000451053 SNRPGP62308 76 aaKnown RBP11.49□□□□□ -0.57
VPS33A-202ENST00000451053 FAM27E3Q08E93 113 aa11.49□□□□□ -0.57
VPS33A-202ENST00000451053 FAPQ12884 760 aa11.49□□□□□ -0.57
VPS33A-202ENST00000451053 MAD2L1BPQ15013 274 aaPredicted RBP11.49□□□□□ -0.57
VPS33A-202ENST00000451053 SNAPC1Q16533 368 aa11.49□□□□□ -0.57
VPS33A-202ENST00000451053 FAM205BPQ63HN1 556 aa11.49□□□□□ -0.57
VPS33A-202ENST00000451053 ACSM5Q6NUN0 579 aa11.49□□□□□ -0.57
VPS33A-202ENST00000451053 Q6ZT83 130 aa11.49□□□□□ -0.57
VPS33A-202ENST00000451053 BEND4Q6ZU67 534 aa11.49□□□□□ -0.57
VPS33A-202ENST00000451053 HDDC2Q7Z4H3 204 aa11.49□□□□□ -0.57
VPS33A-202ENST00000451053 CXorf67Q86X51 503 aaPredicted RBP11.49□□□□□ -0.57
VPS33A-202ENST00000451053 C20orf196Q8IYI0 205 aa11.49□□□□□ -0.57
VPS33A-202ENST00000451053 IQCF1Q8N6M8 205 aa11.49□□□□□ -0.57
VPS33A-202ENST00000451053 POMGNT2Q8NAT1 580 aa11.49□□□□□ -0.57
VPS33A-202ENST00000451053 ZNF519Q8TB69 540 aa11.49□□□□□ -0.57
VPS33A-202ENST00000451053 RNASE6Q93091 150 aaKnown RBP11.49□□□□□ -0.57
VPS33A-202ENST00000451053 RASD2Q96D21 266 aa11.49□□□□□ -0.57
VPS33A-202ENST00000451053 SLC25A44Q96H78 314 aaPredicted RBP11.49□□□□□ -0.57
VPS33A-202ENST00000451053 Q96M85 177 aa11.49□□□□□ -0.57
VPS33A-202ENST00000451053 Q96MT0 163 aa11.49□□□□□ -0.57
VPS33A-202ENST00000451053 ERMAPQ96PL5 475 aaPredicted RBP11.49□□□□□ -0.57
VPS33A-202ENST00000451053 ALKBH3Q96Q83 286 aaPredicted RBP11.49□□□□□ -0.57
VPS33A-202ENST00000451053 NR1H4Q96RI1 486 aaPredicted RBP11.49□□□□□ -0.57
VPS33A-202ENST00000451053 LINC00470Q9BZP3 86 aa11.49□□□□□ -0.57
VPS33A-202ENST00000451053 GRHPRQ9UBQ7 328 aa11.49□□□□□ -0.57
VPS33A-202ENST00000451053 UPB1Q9UBR1 384 aa11.49□□□□□ -0.57
VPS33A-202ENST00000451053 FOXD3Q9UJU5 478 aaPredicted RBP11.49□□□□□ -0.57
VPS33A-202ENST00000451053 IER3IP1Q9Y5U9 82 aa11.49□□□□□ -0.57
VPS33A-202ENST00000451053 TEX13CA0A0J9YWL9 993 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 SNTNA6NMZ2 147 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 SURF4O15260 269 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 TRMUO75648 421 aaKnown RBP11.48□□□□□ -0.57
VPS33A-202ENST00000451053 TXNDC12O95881 172 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 IGHG1P01857 330 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 ITGA5P08648 1049 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 PGA4P0DJD7 388 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 PGA3P0DJD8 388 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 PAICSP22234 425 aaKnown RBP11.48□□□□□ -0.57
VPS33A-202ENST00000451053 IGHV1-2P23083 117 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 SDHAP31040 664 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 CCKARP32238 428 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 ACVR1BP36896 505 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 CD79BP40259 229 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 CSNK1A1P48729 337 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 SNTB1Q13884 538 aaKnown RBP11.48□□□□□ -0.57
VPS33A-202ENST00000451053 TSC22D1Q15714 1073 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 MESTQ5EB52 335 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 C9orf135Q5VTT2 229 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 MEDAGQ5VYS4 303 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 STAC2Q6ZMT1 411 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 ENTHD1Q8IYW4 607 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 ARIH2OSQ8N7S6 290 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 NOXO1Q8NFA2 376 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 OR6N1Q8NGY5 312 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 FBLIM1Q8WUP2 373 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 HDAC2Q92769 488 aaKnown RBP11.48□□□□□ -0.57
VPS33A-202ENST00000451053 TMEM54Q969K7 222 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 ZNF566Q969W8 418 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 MRPL13Q9BYD1 178 aaKnown RBP11.48□□□□□ -0.57
VPS33A-202ENST00000451053 FN3KQ9H479 309 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 CMC2Q9NRP2 79 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 CLN6Q9NWW5 311 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 ASB6Q9NWX5 421 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 ELOVL5Q9NYP7 299 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 BLOC1S6Q9UL45 172 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 KLF2Q9Y5W3 355 aaPredicted RBP11.48□□□□□ -0.57
VPS33A-202ENST00000451053 FREM1Q5H8C1 2179 aa11.48□□□□□ -0.57
VPS33A-202ENST00000451053 HCFC1P51610 2035 aa11.47□□□□□ -0.57
VPS33A-202ENST00000451053 A6NIZ1 184 aa11.47□□□□□ -0.57
VPS33A-202ENST00000451053 OR6C65A6NJZ3 312 aa11.47□□□□□ -0.57
VPS33A-202ENST00000451053 PRSS44E7EML9 344 aa11.47□□□□□ -0.57
VPS33A-202ENST00000451053 ZNF587BE7ETH6 402 aa11.47□□□□□ -0.57
VPS33A-202ENST00000451053 H7C1C5 153 aa11.47□□□□□ -0.57
VPS33A-202ENST00000451053 LYZL6O75951 148 aa11.47□□□□□ -0.57
VPS33A-202ENST00000451053 KRT33AO76009 404 aa11.47□□□□□ -0.57
VPS33A-202ENST00000451053 CNOT4O95628 575 aaKnown RBP11.47□□□□□ -0.57
VPS33A-202ENST00000451053 COX5AP20674 150 aa11.47□□□□□ -0.57
VPS33A-202ENST00000451053 CLRN1P58418 232 aa11.47□□□□□ -0.57
VPS33A-202ENST00000451053 RAP1BP61224 184 aa11.47□□□□□ -0.57
VPS33A-202ENST00000451053 LCN6P62502 163 aa11.47□□□□□ -0.57
VPS33A-202ENST00000451053 RAP1AP62834 184 aa11.47□□□□□ -0.57
VPS33A-202ENST00000451053 CSNK2BP67870 215 aa11.47□□□□□ -0.57
VPS33A-202ENST00000451053 ROR2Q01974 943 aaKnown RBP11.47□□□□□ -0.57
VPS33A-202ENST00000451053 CD47Q08722 323 aa11.47□□□□□ -0.57
VPS33A-202ENST00000451053 KRR1Q13601 381 aaKnown RBP11.47□□□□□ -0.57
VPS33A-202ENST00000451053 SLC25A30Q5SVS4 291 aa11.47□□□□□ -0.57
VPS33A-202ENST00000451053 ADCK1Q86TW2 530 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms