RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 OR11A1Q9GZK7 315 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 SRMSQ9H3Y6 488 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 NIPAL2Q9H841 368 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 PLGRKTQ9HBL7 147 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 EML4Q9HC35 981 aaKnown RBP2.31□□□□□ -2.04
VPS41-207ENST00000439468 TRAPPC4Q9Y296 219 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 SLC25A15Q9Y619 301 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 MAP3K5Q99683 1374 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 NUP153P49790 1475 aaKnown RBP2.31□□□□□ -2.04
VPS41-207ENST00000439468 MYOM2P54296 1465 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 ARHGAP35Q9NRY4 1499 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 SLIT2O94813 1529 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 PREX2Q70Z35 1606 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 PTPN23Q9H3S7 1636 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 SBF2Q86WG5 1849 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 VCANP13611 3396 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 IGKV1D-13A0A0B4J2D9 117 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 A0A0G2JN53 185 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 A6NDX4 124 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 TRIM64CA6NLI5 447 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 TMEM50AO95807 157 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 CST1P01037 141 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 IGHV2-5P01817 119 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 ALDOBP05062 364 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 IGHV4-34P06331 123 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 IGKV1-13P0DP09 117 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 TBPP20226 339 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 KITLGP21583 273 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 ATP5C1P36542 298 aaKnown RBP2.3□□□□□ -2.04
VPS41-207ENST00000439468 GYG1P46976 350 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 SULT1E1P49888 294 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 CRISP3P54108 245 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 RPL23AP62750 156 aaKnown RBP2.3□□□□□ -2.04
VPS41-207ENST00000439468 EIF4EBP2Q13542 120 aaPredicted RBP2.3□□□□□ -2.04
VPS41-207ENST00000439468 TRIM40Q6P9F5 258 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 ZNF621Q6ZSS3 439 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 PLA2G4DQ86XP0 818 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 CDH26Q8IXH8 852 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 ZADH2Q8N4Q0 377 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 FAM71E2Q8N5Q1 922 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 Q8N9W7 124 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 OR9K2Q8NGE7 335 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 SLC22A8Q8TCC7 542 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 LRRC58Q96CX6 371 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 RNF185Q96GF1 192 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 SLC35E1Q96K37 410 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 NRTNQ99748 197 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 RARRES2Q99969 163 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 SLC39A3Q9BRY0 314 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 HDHD3Q9BSH5 251 aaPredicted RBP2.3□□□□□ -2.04
VPS41-207ENST00000439468 RIOK2Q9BVS4 552 aaKnown RBP2.3□□□□□ -2.04
VPS41-207ENST00000439468 DEFB127Q9H1M4 99 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 SLCO1B3Q9NPD5 702 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 KLHL28Q9NXS3 571 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 SPATA7Q9P0W8 599 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 DEC1Q9P2X7 70 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 ZNF225Q9UK10 706 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 CSDC2Q9Y534 153 aaKnown RBP2.3□□□□□ -2.04
VPS41-207ENST00000439468 HEBP2Q9Y5Z4 205 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 NEXMIFQ5QGS0 1516 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 EHBP1L1Q8N3D4 1523 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 TULP4Q9NRJ4 1543 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 NRXN3Q9Y4C0 1643 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 TUBGCP6Q96RT7 1819 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 GTF3C1Q12789 2109 aa2.3□□□□□ -2.04
VPS41-207ENST00000439468 ABCC5O15440 1437 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 FMN1Q68DA7 1419 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 CDHR2Q9BYE9 1310 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 A0A1B0GUA9 196 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 FAM240BA0A1B0GVZ2 78 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 XKRY2A2RUG3 117 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 ERVV-1B6SEH8 477 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 PPP1R2P9O14990 202 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 PSTPIP1O43586 416 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 UPK3AO75631 287 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 CNR1P21554 472 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 FDFT1P37268 417 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 NPBWR2P48146 333 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 SH3BGRP55822 239 aaPredicted RBP2.29□□□□□ -2.04
VPS41-207ENST00000439468 PLP1P60201 277 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 GNMTQ14749 295 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 CYTH1Q15438 398 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 GUCA2BQ16661 112 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 RSPO1Q2MKA7 263 aaPredicted RBP2.29□□□□□ -2.04
VPS41-207ENST00000439468 ZYG11AQ6WRX3 759 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 ZNF836Q6ZNA1 936 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 NIPA1Q7RTP0 329 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 FAM228AQ86W67 206 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 TGIF2LXQ8IUE1 241 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 EGFL6Q8IUX8 553 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 MKXQ8IYA7 352 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 ARIH2OSQ8N7S6 290 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 HSD17B11Q8NBQ5 300 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 NPBQ8NG41 125 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 OR4F15Q8NGB8 312 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 OR2G2Q8NGZ5 317 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 CNDP1Q96KN2 507 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 ZNF285Q96NJ3 590 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 OR2M2Q96R28 347 aa2.29□□□□□ -2.04
VPS41-207ENST00000439468 SORT1Q99523 831 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms