RNA–Protein interactions for RNA: ENST00000434601.7

LINC00539-203, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 960 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-203ENST00000434601 OXGR1Q96P68 337 aa10.05□□□□□ -0.8
LINC00539-203ENST00000434601 LDAHQ9H6V9 325 aa10.05□□□□□ -0.8
LINC00539-203ENST00000434601 FGF20Q9NP95 211 aaPredicted RBP10.05□□□□□ -0.8
LINC00539-203ENST00000434601 RPRD1BQ9NQG5 326 aaKnown RBP10.05□□□□□ -0.8
LINC00539-203ENST00000434601 DIMT1Q9UNQ2 313 aaKnown RBP10.05□□□□□ -0.8
LINC00539-203ENST00000434601 COMMD3-BMI1R4GMX3 469 aa10.05□□□□□ -0.8
LINC00539-203ENST00000434601 PKDREJQ9NTG1 2253 aa10.05□□□□□ -0.8
LINC00539-203ENST00000434601 TRGV5A0A0B4J1U4 118 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 IGHV3-15A0A0B4J1V0 119 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 PRSS37A4D1T9 235 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 SMAD9O15198 467 aaKnown RBP10.04□□□□□ -0.8
LINC00539-203ENST00000434601 CXCL13O43927 109 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 VAMP5O95183 116 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 APOL3O95236 402 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 ADRA2AP08913 450 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 ZNF43P17038 809 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 GSTT1P30711 240 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 MAP2K4P45985 399 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 CLDN15P56746 228 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 CARD18P57730 90 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 EMX1Q04741 257 aaPredicted RBP10.04□□□□□ -0.8
LINC00539-203ENST00000434601 POU4F2Q12837 409 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 C1DQ13901 141 aaKnown RBP10.04□□□□□ -0.8
LINC00539-203ENST00000434601 GGTLC2Q14390 218 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 IRF3Q14653 427 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 BCL2A1Q16548 175 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 SP5Q6BEB4 398 aaPredicted RBP10.04□□□□□ -0.8
LINC00539-203ENST00000434601 TMEM225Q6GV28 225 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 ABLIM2Q6H8Q1 611 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 B3GNT6Q6ZMB0 384 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 SHFQ7M4L6 423 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 SATL1Q86VE3 508 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 PM20D2Q8IYS1 436 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 OR4F15Q8NGB8 312 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 OR51G2Q8NGK0 314 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 OR2T4Q8NH00 348 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 FCGR1BQ92637 280 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 MUL1Q969V5 352 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 CPNE4Q96A23 557 aaPredicted RBP10.04□□□□□ -0.8
LINC00539-203ENST00000434601 MARVELD3Q96A59 401 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 UCN2Q96RP3 112 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 SLX1AQ9BQ83 275 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 CDCA4Q9BXL8 241 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 DEFB127Q9H1M4 99 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 SYT4Q9H2B2 425 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 EXO5Q9H790 373 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 ACOT13Q9NPJ3 140 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 TIGARQ9NQ88 270 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 ASB6Q9NWX5 421 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 MED29Q9NX70 200 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 HAO2Q9NYQ3 351 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 TAS2R16Q9NYV7 291 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 VSX1Q9NZR4 365 aaPredicted RBP10.04□□□□□ -0.8
LINC00539-203ENST00000434601 EXOGQ9Y2C4 368 aaKnown RBP10.04□□□□□ -0.8
LINC00539-203ENST00000434601 TACC2O95359 2948 aa10.04□□□□□ -0.8
LINC00539-203ENST00000434601 NPIPA2E9PIF3 369 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 NPIPA3F8WFD2 350 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 TRMUO75648 421 aaKnown RBP10.03□□□□□ -0.8
LINC00539-203ENST00000434601 GLCEO94923 617 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 IGHG3P01860 377 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 MYL12AP19105 171 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 DCKP27707 260 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 PYCR1P32322 319 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 ATP6V1E1P36543 226 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 BIDP55957 195 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 RPS3AP61247 264 aaKnown RBP10.03□□□□□ -0.8
LINC00539-203ENST00000434601 RUNX1T1Q06455 604 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 DBPQ10586 325 aaPredicted RBP10.03□□□□□ -0.8
LINC00539-203ENST00000434601 PON3Q15166 354 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 EEF1A1P5Q5VTE0 462 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 RNLSQ5VYX0 342 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 MTFR2Q6P444 385 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 NHLRC1Q6VVB1 395 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 B3GLCTQ6Y288 498 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 POMGNT2Q8NAT1 580 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 NOXO1Q8NFA2 376 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 PROKR2Q8NFJ6 384 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 OR9K2Q8NGE7 335 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 OR6K6Q8NGW6 343 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 RORBQ92753 470 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 ZMYND19Q96E35 227 aaPredicted RBP10.03□□□□□ -0.8
LINC00539-203ENST00000434601 ZNF845Q96IR2 970 aaPredicted RBP10.03□□□□□ -0.8
LINC00539-203ENST00000434601 KCNK17Q96T54 332 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 CNN2Q99439 309 aaKnown RBP10.03□□□□□ -0.8
LINC00539-203ENST00000434601 TEAD3Q99594 435 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 TUBA1CQ9BQE3 449 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 ALG12Q9BV10 488 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 SF3B5Q9BWJ5 86 aaKnown RBP10.03□□□□□ -0.8
LINC00539-203ENST00000434601 JAM3Q9BX67 310 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 ADGRL4Q9HBW9 690 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 KLHL13Q9P2N7 655 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 SPRR3Q9UBC9 169 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 TNFRSF10DQ9UBN6 386 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 MOKQ9UQ07 419 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 EXOSC1Q9Y3B2 195 aaKnown RBP10.03□□□□□ -0.8
LINC00539-203ENST00000434601 FKBP7Q9Y680 259 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 POLQO75417 2590 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 OTOGQ6ZRI0 2925 aa10.03□□□□□ -0.8
LINC00539-203ENST00000434601 DCHS2Q6V1P9 2916 aa10.02□□□□□ -0.81
LINC00539-203ENST00000434601 SLC22A23A1A5C7 686 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms