RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 FAM205BPQ63HN1 556 aa10.92□□□□□ -0.66
SKA1-203ENST00000417656 FAM122BQ7Z309 247 aa10.92□□□□□ -0.66
SKA1-203ENST00000417656 TMEM179BQ7Z7N9 219 aa10.92□□□□□ -0.66
SKA1-203ENST00000417656 CDC20BQ86Y33 519 aa10.92□□□□□ -0.66
SKA1-203ENST00000417656 HS3ST5Q8IZT8 346 aa10.92□□□□□ -0.66
SKA1-203ENST00000417656 LINC00471Q8N535 108 aa10.92□□□□□ -0.66
SKA1-203ENST00000417656 NRGNQ92686 78 aa10.92□□□□□ -0.66
SKA1-203ENST00000417656 HTRA1Q92743 480 aa10.92□□□□□ -0.66
SKA1-203ENST00000417656 MCHR2Q969V1 340 aa10.92□□□□□ -0.66
SKA1-203ENST00000417656 GTPBP3Q969Y2 492 aaKnown RBP10.92□□□□□ -0.66
SKA1-203ENST00000417656 RASD2Q96D21 266 aa10.92□□□□□ -0.66
SKA1-203ENST00000417656 FOXB1Q99853 325 aa10.92□□□□□ -0.66
SKA1-203ENST00000417656 ALG12Q9BV10 488 aa10.92□□□□□ -0.66
SKA1-203ENST00000417656 C1QTNF6Q9BXI9 259 aa10.92□□□□□ -0.66
SKA1-203ENST00000417656 MRPL13Q9BYD1 178 aaKnown RBP10.92□□□□□ -0.66
SKA1-203ENST00000417656 EGLN3Q9H6Z9 239 aa10.92□□□□□ -0.66
SKA1-203ENST00000417656 DNAJB9Q9UBS3 223 aa10.92□□□□□ -0.66
SKA1-203ENST00000417656 POFUT2Q9Y2G5 429 aa10.92□□□□□ -0.66
SKA1-203ENST00000417656 CDH10Q9Y6N8 788 aa10.92□□□□□ -0.66
SKA1-203ENST00000417656 ARPC4-TTLL3A0A0A6YYG9 625 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 IGKV1D-43A0A0B4J1Z2 117 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 ZNF503-AS2A6NEH8 195 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 A6NIZ1 184 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 SOCS2O14508 198 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 DHHO43323 396 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 SLC2A10O95528 541 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 GASTP01350 101 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 SLC6A6P31641 620 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 NR1H2P55055 460 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 UBE2NP61088 152 aaKnown RBP10.91□□□□□ -0.66
SKA1-203ENST00000417656 RAP1BP61224 184 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 RAP1AP62834 184 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 BSPH1Q075Z2 132 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 GK3PQ14409 553 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 KPNB1Q14974 876 aaKnown RBP10.91□□□□□ -0.66
SKA1-203ENST00000417656 HIST3H3Q16695 136 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 LRFN4Q6PJG9 635 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 ZNF813Q6ZN06 617 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 ARIH2OSQ8N7S6 290 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 MAGEE2Q8TD90 523 aaPredicted RBP10.91□□□□□ -0.66
SKA1-203ENST00000417656 GIPC3Q8TF64 312 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 NMD3Q96D46 503 aaKnown RBP10.91□□□□□ -0.66
SKA1-203ENST00000417656 BOD1Q96IK1 185 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 SAMD8Q96LT4 415 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 NGBQ9NPG2 151 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 OBP2BQ9NPH6 170 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 NRIP3Q9NQ35 241 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 GRHPRQ9UBQ7 328 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 IER3IP1Q9Y5U9 82 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 APCP25054 2843 aa10.91□□□□□ -0.66
SKA1-203ENST00000417656 RAI1Q7Z5J4 1906 aaPredicted RBP10.9□□□□□ -0.66
SKA1-203ENST00000417656 ARRDC5A6NEK1 342 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 DPRXA6NFQ7 191 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 M0R1B8 84 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 XKRYO14609 159 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 ARHGEF9O43307 516 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 DEAF1O75398 565 aaPredicted RBP10.9□□□□□ -0.66
SKA1-203ENST00000417656 SOX14O95416 240 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 WNT11O96014 354 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 PLAUP00749 431 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 SDHAP31040 664 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 CAPZA2P47755 286 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 RPS6KA3P51812 740 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 SPOCK1Q08629 439 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 RFX4Q33E94 735 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 CLEC12AQ5QGZ9 265 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 NCMAPQ5T1S8 102 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 C10orf128Q5T292 105 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 GPR139Q6DWJ6 353 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 ADAM5Q6NVV9 412 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 DPY19L2P2Q6ZN68 376 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 ZNF704Q6ZNC4 412 aaPredicted RBP10.9□□□□□ -0.66
SKA1-203ENST00000417656 SSX8Q7RTT4 187 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 KBTBD8Q8NFY9 601 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 OR8D4Q8NGM9 314 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 NSMAFQ92636 917 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 DUS3LQ96G46 650 aaKnown RBP10.9□□□□□ -0.66
SKA1-203ENST00000417656 ERMAPQ96PL5 475 aaPredicted RBP10.9□□□□□ -0.66
SKA1-203ENST00000417656 NIPSNAP1Q9BPW8 284 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 IFT27Q9BW83 186 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 DGCR6LQ9BY27 220 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 PLA2G12AQ9BZM1 189 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 ESRP2Q9H6T0 727 aaKnown RBP10.9□□□□□ -0.66
SKA1-203ENST00000417656 NTN4Q9HB63 628 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 NOX3Q9HBY0 568 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 TMEM38BQ9NVV0 291 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 PDP1Q9P0J1 537 aaPredicted RBP10.9□□□□□ -0.66
SKA1-203ENST00000417656 MGAT4BQ9UQ53 548 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 RNF115Q9Y4L5 304 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 MAGED1Q9Y5V3 778 aaPredicted RBP10.9□□□□□ -0.66
SKA1-203ENST00000417656 ITPR2Q14571 2701 aa10.9□□□□□ -0.66
SKA1-203ENST00000417656 IMPA2O14732 288 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 HLA-HP01893 362 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 CD3EP07766 207 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 IGFBP1P08833 259 aaPredicted RBP10.89□□□□□ -0.67
SKA1-203ENST00000417656 NR2C1P13056 603 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 GSTM3P21266 225 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 ZNF84P51523 738 aa10.89□□□□□ -0.67
SKA1-203ENST00000417656 ZNF133P52736 654 aaPredicted RBP10.89□□□□□ -0.67
SKA1-203ENST00000417656 ACTR3P61158 418 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms