RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 ALX1Q15699 326 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 LARP4Q71RC2 724 aaKnown RBP eCLIP4.31□□□□□ -1.72
SCN1A-202ENST00000375405 NIPA1Q7RTP0 329 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF583Q96ND8 569 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 PRAP1Q96NZ9 151 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 KCTD15Q96SI1 283 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-202ENST00000375405 CNN2Q99439 309 aaKnown RBP4.31□□□□□ -1.72
SCN1A-202ENST00000375405 DUSP23Q9BVJ7 150 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 STARD5Q9NSY2 213 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 KLK11Q9UBX7 282 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 AK3Q9UIJ7 227 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 G3V3Q6 166 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 F2RL2O00254 374 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 UPK1AO00322 258 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 CDX4O14627 284 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-202ENST00000375405 SLC25A20O43772 301 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 RFPL1O75677 317 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 SLC22A5O76082 557 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 TPT1P13693 172 aaKnown RBP4.31□□□□□ -1.72
SCN1A-202ENST00000375405 TYRP14679 529 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 GABRB1P18505 474 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 SRMP19623 302 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 CD6P30203 668 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 THBS4P35443 961 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 PAX5Q02548 391 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 GK2Q14410 553 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-202ENST00000375405 TMEM95Q3KNT9 176 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 MIDNQ504T8 468 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 DGAT2L6Q6ZPD8 337 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 TMEM183AQ8IXX5 376 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 OR52L2PQ8NGH6 319 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 SMPDL3AQ92484 453 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 PAAF1Q9BRP4 392 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 ARHGAP39Q9C0H5 1083 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 ABCG5Q9H222 651 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 CXXC4Q9H2H0 198 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 ITM2CQ9NQX7 267 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 SNX15Q9NRS6 342 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 ENPP5Q9UJA9 477 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 B3GALT5Q9Y2C3 310 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 HSPE1-MOB4S4R3N1 261 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 TRPM1Q7Z4N2 1603 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 CDK12Q9NYV4 1490 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-202ENST00000375405 LOC107984156A0A0G2JMH3 177 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 A0A1W2PP18 115 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 FAAHO00519 579 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 SLC22A2O15244 555 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 SLC43A1O75387 559 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 CSF1P09603 554 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 FREM3P0C091 2139 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 ARSBP15848 533 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 PCSK2P16519 638 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 DRD5P21918 477 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 TACR1P25103 407 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 CXCL12P48061 93 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 KCNQ1P51787 676 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 ACTBP60709 375 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF91Q05481 1191 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 APOFQ13790 326 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 KIF26BQ2KJY2 2108 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 LRRC10Q5BKY1 277 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 USP50Q70EL3 339 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-202ENST00000375405 OSTM1Q86WC4 334 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 ARL17AQ8IVW1 177 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 ABRAQ8N0Z2 381 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 PRSS35Q8N3Z0 413 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 DNAJC22Q8N4W6 341 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 ABHD4Q8TB40 342 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 ZFAND1Q8TCF1 268 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 PTX4Q96A99 478 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 TMEM147Q9BVK8 224 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 RAB33BQ9H082 229 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 POFUT1Q9H488 388 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 FAM53CQ9NYF3 392 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-202ENST00000375405 CCL27Q9Y4X3 112 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 YLPM1P49750 1951 aaKnown RBP4.3□□□□□ -1.72
SCN1A-202ENST00000375405 UNC119BA6NIH7 251 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 AQP12BA6NM10 295 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 GYPAP02724 150 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 HLA-DPB1P04440 258 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 ERBB2P04626 1255 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 FAM87AP0C7U9 286 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 GLRA1P23415 457 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 G6PCP35575 357 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 TAS2R45P59539 299 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 ST3GAL1Q11201 340 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 IL10RAQ13651 578 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF273Q14593 569 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 ZMAT1Q5H9K5 638 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 APOOLQ6UXV4 268 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 ASPGQ86U10 573 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 RTN4RL1Q86UN2 441 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-202ENST00000375405 AQP12AQ8IXF9 295 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 OR4K13Q8NH42 304 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 WBP2Q969T9 261 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 RTN4RQ9BZR6 473 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF71Q9NQZ8 489 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-202ENST00000375405 FBXO5Q9UKT4 447 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 PADI3Q9ULW8 664 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms