RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 ZNF879B4DU55 563 aa14.02□□□□□ -0.16
CCDC40-202ENST00000374876 GPRIN2O60269 458 aa14.02□□□□□ -0.16
CCDC40-202ENST00000374876 HIST1H2ABP04908 130 aa14.02□□□□□ -0.16
CCDC40-202ENST00000374876 F13BP05160 661 aa14.02□□□□□ -0.16
CCDC40-202ENST00000374876 ASAH2BP0C7U1 165 aa14.02□□□□□ -0.16
CCDC40-202ENST00000374876 FAM157BP0CG42 384 aa14.02□□□□□ -0.16
CCDC40-202ENST00000374876 EPXP11678 715 aa14.02□□□□□ -0.16
CCDC40-202ENST00000374876 SLC25A1P53007 311 aa14.02□□□□□ -0.16
CCDC40-202ENST00000374876 RPS11P62280 158 aaKnown RBP eCLIP14.02□□□□□ -0.16
CCDC40-202ENST00000374876 MRPS15P82914 257 aaKnown RBP14.02□□□□□ -0.16
CCDC40-202ENST00000374876 ZNF117Q03924 483 aa14.02□□□□□ -0.16
CCDC40-202ENST00000374876 HSD17B12Q53GQ0 312 aa14.02□□□□□ -0.16
CCDC40-202ENST00000374876 LINC01590Q5TEZ4 76 aa14.02□□□□□ -0.16
CCDC40-202ENST00000374876 PYHIN1Q6K0P9 492 aa14.02□□□□□ -0.16
CCDC40-202ENST00000374876 LANCL3Q6ZV70 420 aa14.02□□□□□ -0.16
CCDC40-202ENST00000374876 ASB18Q6ZVZ8 466 aa14.02□□□□□ -0.16
CCDC40-202ENST00000374876 HIST3H2AQ7L7L0 130 aa14.02□□□□□ -0.16
CCDC40-202ENST00000374876 FAM122BQ7Z309 247 aa14.02□□□□□ -0.16
CCDC40-202ENST00000374876 C7orf57Q8NEG2 295 aa14.02□□□□□ -0.16
CCDC40-202ENST00000374876 EXTL1Q92935 676 aa14.02□□□□□ -0.16
CCDC40-202ENST00000374876 HIST1H2ACQ93077 130 aa14.02□□□□□ -0.16
CCDC40-202ENST00000374876 KTI12Q96EK9 354 aaPredicted RBP14.02□□□□□ -0.16
CCDC40-202ENST00000374876 SNX18Q96RF0 628 aa14.02□□□□□ -0.16
CCDC40-202ENST00000374876 LPAR4Q99677 370 aa14.02□□□□□ -0.16
CCDC40-202ENST00000374876 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP14.02□□□□□ -0.16
CCDC40-202ENST00000374876 ABRACLQ9P1F3 81 aa14.02□□□□□ -0.16
CCDC40-202ENST00000374876 GRHPRQ9UBQ7 328 aa14.02□□□□□ -0.16
CCDC40-202ENST00000374876 COPS7AQ9UBW8 275 aa14.02□□□□□ -0.16
CCDC40-202ENST00000374876 MOKQ9UQ07 419 aa14.02□□□□□ -0.16
CCDC40-202ENST00000374876 HS3ST3B1Q9Y662 390 aa14.02□□□□□ -0.16
CCDC40-202ENST00000374876 ORC5O43913 435 aa14.02□□□□□ -0.17
CCDC40-202ENST00000374876 ALOX12BO75342 701 aa14.02□□□□□ -0.17
CCDC40-202ENST00000374876 LCN1P31025 176 aa14.02□□□□□ -0.17
CCDC40-202ENST00000374876 UQCRC1P31930 480 aa14.02□□□□□ -0.17
CCDC40-202ENST00000374876 NR0B1P51843 470 aaKnown RBP14.02□□□□□ -0.17
CCDC40-202ENST00000374876 CLDN20P56880 219 aa14.02□□□□□ -0.17
CCDC40-202ENST00000374876 RPL18Q07020 188 aaKnown RBP14.02□□□□□ -0.17
CCDC40-202ENST00000374876 CHAF1BQ13112 559 aa14.02□□□□□ -0.17
CCDC40-202ENST00000374876 EBPQ15125 230 aaKnown RBP14.02□□□□□ -0.17
CCDC40-202ENST00000374876 SF3B4Q15427 424 aaKnown RBP eCLIP14.02□□□□□ -0.171e-7■■■■□ 25.6
CCDC40-202ENST00000374876 SYT9Q86SS6 491 aa14.02□□□□□ -0.17
CCDC40-202ENST00000374876 LRRC75AQ8NAA5 344 aa14.02□□□□□ -0.17
CCDC40-202ENST00000374876 ZNF511Q8NB15 262 aa14.02□□□□□ -0.17
CCDC40-202ENST00000374876 UPRTQ96BW1 309 aa14.02□□□□□ -0.17
CCDC40-202ENST00000374876 ZNF524Q96C55 264 aa14.02□□□□□ -0.17
CCDC40-202ENST00000374876 TSSK2Q96PF2 358 aa14.02□□□□□ -0.17
CCDC40-202ENST00000374876 MARVELD1Q9BSK0 173 aa14.02□□□□□ -0.17
CCDC40-202ENST00000374876 C12orf10Q9HB07 376 aa14.02□□□□□ -0.17
CCDC40-202ENST00000374876 RANGRFQ9HD47 186 aaPredicted RBP14.02□□□□□ -0.17
CCDC40-202ENST00000374876 BRD7Q9NPI1 651 aa14.02□□□□□ -0.17
CCDC40-202ENST00000374876 P4HTMQ9NXG6 502 aa14.02□□□□□ -0.17
CCDC40-202ENST00000374876 CLEC4AQ9UMR7 237 aa14.02□□□□□ -0.17
CCDC40-202ENST00000374876 ALG5Q9Y673 324 aa14.02□□□□□ -0.17
CCDC40-202ENST00000374876 IGHV3-20A0A0C4DH32 117 aa14.01□□□□□ -0.17
CCDC40-202ENST00000374876 ARGFXA6NJG6 315 aa14.01□□□□□ -0.17
CCDC40-202ENST00000374876 PSMD9O00233 223 aa14.01□□□□□ -0.17
CCDC40-202ENST00000374876 EEF1E1O43324 174 aaKnown RBP14.01□□□□□ -0.17
CCDC40-202ENST00000374876 LANCL1O43813 399 aa14.01□□□□□ -0.17
CCDC40-202ENST00000374876 ATF1P18846 271 aa14.01□□□□□ -0.17
CCDC40-202ENST00000374876 CXCR1P25024 350 aa14.01□□□□□ -0.17
CCDC40-202ENST00000374876 LTBQ06643 244 aa14.01□□□□□ -0.17
CCDC40-202ENST00000374876 PLCXD2Q0VAA5 305 aa14.01□□□□□ -0.17
CCDC40-202ENST00000374876 SLC16A9Q7RTY1 509 aa14.01□□□□□ -0.17
CCDC40-202ENST00000374876 C9orf40Q8IXQ3 194 aa14.01□□□□□ -0.17
CCDC40-202ENST00000374876 OR5H6Q8NGV6 325 aa14.01□□□□□ -0.17
CCDC40-202ENST00000374876 PHYHIPQ92561 330 aa14.01□□□□□ -0.17
CCDC40-202ENST00000374876 ABHD1Q96SE0 405 aa14.01□□□□□ -0.17
CCDC40-202ENST00000374876 ADAM19Q9H013 955 aa14.01□□□□□ -0.17
CCDC40-202ENST00000374876 MED13Q9UHV7 2174 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 NDUFB5O43674 189 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 SLC43A1O75387 559 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 NUDT14O95848 222 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 TACSTD2P09758 323 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 GSTT2P0CG29 244 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 GSTT2BP0CG30 244 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 SNRPBP14678 240 aaKnown RBP14□□□□□ -0.17
CCDC40-202ENST00000374876 CD83Q01151 205 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 IFITM2Q01629 132 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 GPR176Q14439 515 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 TBR1Q16650 682 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 EMC4Q5J8M3 183 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 CEP78Q5JTW2 689 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 POMZP3Q6PJE2 187 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 SLC29A4Q7RTT9 530 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 NUP54Q7Z3B4 507 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 FAM220AQ7Z4H9 259 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 MARCH3Q86UD3 253 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 OR11G2Q8NGC1 345 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 METTL21AQ8WXB1 218 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 TAAR8Q969N4 342 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 TRIM63Q969Q1 353 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 KLHDC3Q9BQ90 382 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 BEX2Q9BXY8 128 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 MFRPQ9BY79 579 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 TBL1XR1Q9BZK7 514 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 RTN4RQ9BZR6 473 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 WWTR1Q9GZV5 400 aa14□□□□□ -0.17
CCDC40-202ENST00000374876 SRA1Q9HD15 236 aaKnown RBP14□□□□□ -0.17
CCDC40-202ENST00000374876 AK6Q9Y3D8 172 aaKnown RBP14□□□□□ -0.17
CCDC40-202ENST00000374876 TXNDC12O95881 172 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms